RNA id: TU1506126


Basic Information

Item Value
RNA id TU1506126
length 1907
lncRNA type sense_over
GC content 0.41
exon number 2
gene id LOC110490781
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 66808409 ~ 66920061 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggacttcTCTGCCGTGTGATTGGCTAAGCCTCTGTCTGGTCACACTCAGTGGGGACGGGACAAGatcTGTGGGATGGTGTTCACATGCTGCTTACACAGAAGGATTAAGTTGGATCCTTACTGAACCCTACCGTCAAGCCCCCCCAACACCATCCTGCCTCATGGGCCAGGGAGCAACGATGCCTGCTGAACACTCAACCTTGACCTCTAACCCCTCCTAACCTCTGAACCTTACGATCCAACCCTGCCTGGACCTTCCTGGATCCTTCTGCACCCCTCCCTTGGCTTGGATGCAtgcatagccccccccccctctcaaagACAAGGCCAATGAAGAAGAGATGATTTGGTATTATGGTATTGTTATTTTCTGTAGGTAACCTACTGCTGTTTATGTAAGGTAGCTCTTACTGTATGTTGTCAATACAGTCAAATCCTTACTGTAGATTTCACAACATTCCACACAACTGGAAGGCAACCCGAAGTGGTTGTGACTGAGAATCAAGTGTACTGTACACACTCTCATGGCGTTGCTGCTTACGAAGGGTTATTCAGTTAGTGCTATATCCAGTGTGTCACGGATGTGGCCCCCAACGTGCCTCTGTCATTGTTTTATCACGTATTCTTTGATAGCAATGTTACACCAATGTAATGGTTCACCACAAAGGGAATCCCATGGTCATCGATGTTTGATCTACGTCACAAAGAAAACAATCATGAGTTGATTGATATCCACAGAATAATCAAGCAGAAATGGGGAAAACCTATACTTGATATGAATGAAAATAGCACTAAACGCTGCTAAGAGTAACGTTGCAGCATTTCTGAATGTGTTGCCTCCGTAGTTTGACTAACACATCTGGTTCTGTGTTGTATGCTATGCTAAAGGTGTTGATATCGGCAAAATCGCCTCTCTTGCAGTACCATATAAACCTACCACTCATCTTTCAATACCAGGACCAGTTGACTTGTTTTACGACCACTTTTATTATGCTGGAGAAACATGTTGTGATTTACtactgatacagggtcagatctTTCTCTGTCACGCTACTGGTTAAGATTAGGATTCAGGGGTTATGGGTGACTTCTAGTTGAACAGGAGAGGTTTGAACTGTCATGAGTCAGTCCTCTCCTCTGGTGTGGGTTAGTATCCCCATCCAGTGGTAGATATTGGTATATACTCCTGTGCAGTGCTCCTGTAGTATTCTGTGTAAGGTTGCAAAATTTGgagaactttcaataaattccctggttttccagaaatcctgtttgGGGGATTCCGGATTGTCTGCTTATGTCTTACACGTTTCCACAAGAGGACACTTTCAAAGAGAGCATTCATTGGCTTGACTATTGTCAAGGACACATTCAAATAGTATTGGTTGTCCATTACCAAGATAGGACATGGGTCTTTGTTTTTTAGGAGTGCTGGTAATTCAGCTGACCAGTTCCAGTTGATACAATGACAACAATCCTTTGTCAAAGTTCTATGGATGTTTTGCTGTTTTCCAAGACATGTAGACCCTTATACAGATGGTATTTGTTCTATTCCTCCTAGTGACCAACAGAAAGCTGTTCTTGTTGTTCATGTATTTTTCTAATCGAAATGGGTCAAAATATGATATAACATTATAGTATGTTTAATATAAAATATCTAATAAAACATATATGATCTGGGCTCTTTCTATACTGTAGACTGTAGTAATCAAAGTATGCCTTTGTCTGTTTAACAACAATGTCATACTAGCTTTTGAATTGATGTTGATGGTAGTCTTTAACCAGATAGACTTTATTTGTGTTTCCTACATCATTCAGTGGTTTGGTATTATTATTCCCTGCCGGTCTCTTTGCATCAAGGTCTTGAATGTTTTGTTACAGTATATGACTATTGCTACTTTAAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1506141 lncRNA downstream 16446 66788845 ~ 66792001 (-) True G1319793
TU1505944 lncRNA downstream 145529 66655198 ~ 66662918 (-) True LOC110501008
TU1505914 lncRNA downstream 169822 66629402 ~ 66638625 (-) True LOC110519130
TU1505929 lncRNA downstream 190740 66617096 ~ 66617707 (-) True G1319620
TU1505855 lncRNA downstream 245856 66555326 ~ 66562591 (-) False G1319559
TU1506154 lncRNA upstream 7308 66820432 ~ 66829319 (-) True G1319803
TU1506170 lncRNA upstream 56170 66869294 ~ 66884898 (-) False G1319818
TU1506181 lncRNA upstream 56856 66869980 ~ 66878663 (-) False G1319818
TU1506194 lncRNA upstream 57292 66870416 ~ 66872828 (-) True G1319820
TU1506173 lncRNA upstream 58533 66871657 ~ 66882680 (-) False G1319818
XM_036945010.1 mRNA downstream 95415 66655198 ~ 66713032 (-) False LOC110501008
XM_036945556.1 mRNA downstream 177846 66564918 ~ 66630601 (-) False LOC110519130
XM_036945009.1 mRNA downstream 254862 66519718 ~ 66553585 (-) False LOC110515929
XM_036945007.1 mRNA downstream 294923 66417454 ~ 66513524 (-) False LOC118938831
XM_036945011.1 mRNA upstream 110918 66924042 ~ 66940668 (-) False LOC110490597
XM_036945012.1 mRNA upstream 110918 66924042 ~ 66940668 (-) False LOC110490597
XR_005036195.1 mRNA upstream 110918 66924042 ~ 66940668 (-) False LOC110490597
XR_005036196.1 mRNA upstream 110919 66924043 ~ 66940668 (-) False LOC110490597
XR_005036197.1 mRNA upstream 111620 66924744 ~ 66940668 (-) True LOC110490597
TU1505596 other downstream 526339 66279045 ~ 66282108 (-) True G1319357
TU1505028 other downstream 1335283 65469967 ~ 65473164 (-) True G1318935
TU1504423 other downstream 1657047 65068277 ~ 65151400 (-) False G1318477
TU1504422 other downstream 1657047 65084759 ~ 65151400 (-) False G1318477
TU1504148 other downstream 2323129 64482827 ~ 64485318 (-) False LOC110499867
TU1506127 other upstream 43055 66856179 ~ 66862281 (-) True G1319781
TU1506128 other upstream 50717 66863841 ~ 66867740 (-) True LOC110490781
TU1506236 other upstream 147827 66960951 ~ 66961304 (-) True G1319847
TU1506555 other upstream 267657 67080781 ~ 67084605 (-) True LOC110511902
TU1506612 other upstream 379992 67193116 ~ 67193493 (-) True G1320139

Expression Profile