RNA id: XR_005036197.1


Basic Information

Item Value
RNA id XR_005036197.1
length 3717
RNA type mRNA
GC content 0.52
exon number 18
gene id LOC110490597
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 66924042 ~ 66940668 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAGAGTTACAAATGTAGTGTTTAATTTGTAGCGGGACAAAATAGAGACCGTGCCCTGGACACACTTTGGACGGCACCGTGTACCTCCTTGCCCAGGCGTTGTCATAGTTACAGATTATGTGTAGCGCACAAGTCTTTTGTTGTCCATGCTGCCCTTCCACTGTCGCTGTCATTCTAATAGTACTAATTACCTGTTGCATGTTGATATTTAACGGGAGCTCTGTCTACCCTAAGTGGTGATTATTAGTGAGAACTCGAACCCTAAATCCCCTCAGGCGACTGCCCCATGACATCACATGGTATGCGAATTACTTTTCAAAGCGTCGTTTGAGAGGCAAGAACTTCCTAAATAGGAAGTGCGATCATCGCTTTCTGTATTTTGGTCCACGTTGAAAGTTTCAGGGCAAATATCTTaatattttggatataaaaagGAACCTGGGAACAAGACAGACCATTTACTGAGATATGAAAACTCCTAGACAGACCATTTACTGAGATATGAAAACTCCTAGACAGACCATTTACTGAGATATGAAAACTCCTAGACAGACCATTTACTGAGATATGAAAACTCCTAGACAGACCATTTACTGAGATATGAAAACTCCTAGACAAACCATTTACTGAGATATGAAAACTCCTAGACAGACCATTTACTGAGATATGAGAACTCCTAGACAGACCATTTACTGAGATATGAGAACTCCTAGACAGACCATTTACTGAGATATGAAAACTCCTAGACAGACCATTTACTGAGATATGAAAACTCCTAGACAGACCATTTACTGAGATATGAAAACTCCTAGACAGACCATTTACTGAGATATGAAAACTCCTAGACAGACCATTTACTGAGATATGAAAACTCCTAGACAGACCATTTACTGAGATATGAAAACTCCTAGACAGACCATTTACTGAGATATGAAAACTCCTAGACAGACCATTTACTGAGATATGAAAAATCCTAGACAGACCATTTACTGAGATATGAAAACTCCTAGACAGTCTCTGTGGCCTCATCACTACTGACTTGTGGTGCCTGGTCTCATCGCTCACCATGACCCCAACCGGCCAGGCCGAGGAGTGAGACAGCCATGTCTGATTCTACCTTGTTCAGAGCCACCAGAATACTCTGCAGAAGTATATCTAGTGACATGGAAGAGTCTGAGGCCAAGGGCAGAGGAGGAGCTGTCCCCATGAGGAAGAGTTCAGACAGGAGGGGTTCTGACTGGGGAAGCATCGCCATGCTGGATAAGACCAAGGAATTCTTCCAGACCTGCGATGTGGAGGGCAAAGGCTTCATCACACGCACCAATATGAGGaGGCTTCACAGAGAACTACCCCTCACTGCTGAAGAACTGGAGAATGTCTTTGACTCCCTGAACACTGACCAGAACGGCTACCTCACCCTCGAAGTATTCTCATCAGGATTCAGTCAGTTCCTGCACAGCCGGAGGATCTCTGTAGCCGAGGACGCAGCACCCGCCCTCCCCACTTCTAGGAAGCCCTCAGAAGCCCTGTACCAGAGCCAATGGGATGAGAGGTTGACTGGAGggtgggaggatgaggaggagagtcaCTTCTGTATGCTGCTGGAGAGCCTAGGGGCCAGCAACGTGTTCCAGGAtccAGGCGAGGTGCGCAGCTTGTGGGCCCAGCTGAGGAGGGACGAGCCTCACCTCCTGTCGAACTTTGAGGAATTCCTGGCCAGAGTCACCTTCCAGATCAAAGAGgccaaagaggagaggagggagatggagagcgcCCTCCAGAGGAAAGAAGCCACACACGACAGTGAGATCCGCGGTCTGTATGAAGAAATGGAGCAACAAATGAAAAGCGAGAAGGACCGGCTGCTCCTCCAGGACTCGGAGCGTCTCCAGTCTCGTAGTCACGACCTGGAGCACCAGCTgtccagtaaggagagagagctggagcagCTCTTCCAGAAACAGAGGAGGTTGGATCTCCAGTGTCGCGACCTGAGCAGTGAGCAGCAGGAGAGCCGGGTGGAGAATGTCAAGCTGAAGATGACCAACGAGGAACTGAGCAGAGAGCTGGAGAGCACCTGTCAGGAACTGTCCTTGGCCCAGGAACAACTGACCATGCTGCAGGACCAGGCTTCCCGCCTgcaccaggagagagagatggAAATGTATCGAGTCACTGAGggactacagagagagaaacagagtctGATGAAACAACTAGACCTTCTCAGAGAGATGAACAAACATTTAAAAGATGAGCGAGACATATACTGTGCTGTGAACCCCAGGAAGTCCCTCAAACAGAAGCAGAGAGCCGGCTTGGTCAATCTGTTTGCGGACACCAGCCAGCAGCCGGTTAAAAGAGCCTCACTCCTCACCCACAATGGGGGTTCCTATGAGTTCCTTGATGCACTGCCAGTAGAACACCTTCAAATCTCTtttgtctcctccccctcctcatctaGCGAGGACGATGTTGACACCGCTTGTCCACCACGTTCACCGAAAACCAACTACGGCCTGGCCAACGGCTACCACGACTCCAACACCTCGTCTCCAACCCAAGTGGTTGAGGTGGAGGCGCAGGGggtgagggtgaaggagaggctCTCCAAGTTCGAGTCAGAGAAGACCCTCGCCCCCACCCAGAACGAAAGGGACAGGCATACAGAGTACCAGAGTAAGCCGGAGGTTGGGGGCGATGGGCTGGACGGTCCCCCAGATGGGTGGCCTCTCCGTCGGGTTATCTCCATCGAGGAGGACCACCTCCCCCACCTGCTTCATGGAGGGCCCCAGCCCCTGCTGCACCAGCTCAGtgaggaagacgaggaggaggaagaggagcaagGGAAGGAAGATCTGGAGAGAAGTATCTTCTTCGCCCCTGTTCCTCTACCTGTCCCGGTCACGACAGTGTCCCCCTTCAAACACCAAGGTAGTTTCAGCAGAATGAGAAATATCCCCTCGTCACCTCGAGGACAGCCCGTCGGCAAGGAGACCCAAAATagggtgaaggagagggccGTGCCTGCCCCAGACCGCCTGTTTAAGGTGCTTCTGGTGGGCAACTCCAGTGTGGGCAAGACTTCCCTGCTGCGCACCTTCTGTGACGGCCGCTTCAACCCCTCCAGCCCCGCTACTGTGGGTATTGACTACAGTGTGAAGACTCTAATGTTGGACAACACCCAGGTAGCCATGCAGCTGTGGGACACGGCCGGGCAGGAGAGGTACCGCAGCATCACCAAGCAGTTCTTCCGTAAGGCAGACGGCGTGGTGGTCATGTACGACATCACGTTGCTGGACAGCTTCAAGGCCGTGCGACCCTGGCTCATCAACGTCCAGGAGGCTGCGGGAGTGGGCATTCCCATCCTGCTCCTGGGCAACAAGATGGACGCGACGTCCGAGAGGGAGGTACCACTTAAAGATGCAGAGACTCTGGCCCACGACACCCGTGTGATATTCTATGAGGTCAGTGCTTACACCGGCTACAACGTGACAGAGGCCATGATCCACCTGGCCAggtaagggagggagagggacagcccCTAGGTATCCAGATCTGAATGAATTGGACAGAGTGCTGAAAGAGCAGGAGGATCGGGTGAGAGACACGTTTGTCTTACTGGAGGTCCTGCCCGTCAAGAAGAAAGCCTGCTGCAAGTGAAGACACTctgacagaatagagagagagagcatttggAATGGCTAGAGACTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1506168 lncRNA downstream 5342 66912200 ~ 66919402 (-) True G1319817
TU1506214 lncRNA downstream 23262 66900897 ~ 66901482 (-) True G1319829
TU1506210 lncRNA downstream 33926 66890133 ~ 66890818 (-) True G1319826
TU1506174 lncRNA downstream 39846 66881744 ~ 66884898 (-) False G1319818
TU1506229 lncRNA upstream 3602 66944270 ~ 66944941 (-) True G1319840
TU1506230 lncRNA upstream 4578 66945246 ~ 66945497 (-) True G1319841
TU1506232 lncRNA upstream 12970 66953638 ~ 66953932 (-) True G1319843
TU1506234 lncRNA upstream 18130 66958798 ~ 66959012 (-) True G1319845
TU1506235 lncRNA upstream 19262 66959930 ~ 66960160 (-) True G1319846
XM_036945022.1 mRNA downstream 4683 66808409 ~ 66920061 (-) False LOC110490781
XM_036945023.1 mRNA downstream 29033 66808409 ~ 66895711 (-) False LOC110490781
XM_036945024.1 mRNA downstream 29033 66808409 ~ 66895711 (-) False LOC110490781
XM_036945025.1 mRNA downstream 29385 66808409 ~ 66895359 (-) False LOC110490781
XM_036945010.1 mRNA downstream 211712 66655198 ~ 66713032 (-) False LOC110501008
XM_021564036.2 mRNA upstream 72 66940740 ~ 66942750 (-) False LOC110490598
XM_036945027.1 mRNA upstream 72 66940740 ~ 66942750 (-) True LOC110490598
XM_036945029.1 mRNA upstream 130646 67071314 ~ 67075633 (-) False LOC118938832
XM_036945030.1 mRNA upstream 131340 67072008 ~ 67075634 (-) False LOC118938832
XM_036945031.1 mRNA upstream 131496 67072164 ~ 67075634 (-) True LOC118938832
TU1506125 other downstream 29052 66808447 ~ 66895692 (-) False LOC110490781
TU1506128 other downstream 57004 66863841 ~ 66867740 (-) True LOC110490781
TU1506127 other downstream 62463 66856179 ~ 66862281 (-) True G1319781
TU1505596 other downstream 642636 66279045 ~ 66282108 (-) True G1319357
TU1505028 other downstream 1451580 65469967 ~ 65473164 (-) True G1318935
TU1506236 other upstream 20283 66960951 ~ 66961304 (-) True G1319847
TU1506555 other upstream 140113 67080781 ~ 67084605 (-) True LOC110511902
TU1506612 other upstream 252448 67193116 ~ 67193493 (-) True G1320139
TU1507110 other upstream 852357 67793025 ~ 67797835 (-) True LOC118938833
TU1508038 other upstream 1131733 68072401 ~ 68176382 (-) True LOC110513021

Expression Profile