RNA id: XM_036945029.1


Basic Information

Item Value
RNA id XM_036945029.1
length 1668
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC118938832
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 67071314 ~ 67075634 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCAGACAAGGACGTCCTCCTTTAAGAGGGTGTGGTTTGACTGGTGTTTTTACTACAGCATGTTCAAGCAGTGCTGAACCAGGTCAGGAGTGGCAGGCGAATCTTGGATAGCTACAGTACCATTCACCTTTACTACAAAACAAAACCTCAGGAGAAGATGTGGGCTCAATCAGAAAGCAGTTCGGAAGTTGAGGACATGGACATCTCAGACATGCCTGTTACGACAGATTACAAAACAAATCCATGGCATTGGTTCTACCTGGACACGAGGGGAACGTGGCACATGTTTGAGAATGATCAAATGGAAAGAAACTCTCTGACCAGTCAGGACATTGAAAGGTATTACACAAGAAATCCAAAAGGAGTGTTACAGATATCCACATCCAGAGGCATCAACAAGCTGGATTTCGCTGAGATGGTTCTGACTGACATCAAAACAAGGAAGCAGACGCCAATCAAACGATCCAACAACACTCACAACACTGGGAATAGTGGAAGATGCTCTTGTGTTAGTCCAGTGCCCACACACTGGGAAGCGGTGGACCCCAAATACCCCTATCAGGTGTTCTGTCTGAAGAGAGACACAGCTGAATATGATTATGTGTCAGGCTGCTTAAAGGATGGGGAACTAGACAGACGCATCAAATCCATCTGTAGAATACAGAACCTGGACCTCTGGGAGTTTTACTGTAGGAAAAAGATTCAGTTGGGAAGGATTCAAGGTGTTACAGAGGTCAAGGAGGAGAAGCTGTTTCATGGAACAAAAGTCAGCAACGTACACTCTATTTGTACATACAATTTTGACAACAGGTTAGCTGGTATCAACGGCCATATTCTTGGAAAAGGTACCTACTTTGCAAAATTTGCCTCATATGCAGATACGTACAGTCCATGGAACACTGATCCAGTACCTCTGTTTGGTGAGGCACCACAAGGCTTCAGTAGCCAAAAGACCAAAACAATGTTTCTGTGCAAGGTGATAGTTGGGAAAACTACACTGGGAAAGACAGATTACCTCAAGCCTGATGACAAAAGTGCTATCAACTTCCATGACAGTTGTGTGGACAATGTCATATATCCCAGAATTTTTGTCATATTTGATCCCAATCAGATATATCCAGAGTACTTAATTCAGTACTATTGAAATAAAGATGGAGACCGAGTGACCTACACTGAGTTGCCATGTGCAATATGAACTGTCAGCCTGTCATTGGAATACTGTTATTTTAAACAGTGGTCCATTCTCAATGGAAATCATTTCTATTACGATGGATTGTGTAACAGGCTATTGCGGTGGTGTCGGAATAGGGCGGCGCTCAGGGGCTGTGGGTGTTTGAGTGAGAAAGACCAGGAGGAGAACCAACGAGTCAACACAGCCCCCTTCATTATCAACGCATTGTGCCGACAACATGAAAGAGCCATTCCAGACTCTGAAGCAGGAGGATTTTGAAAGTTAGGTGTTAGCCAGACTAGTTAGCCTACAGTAGGAAAGGTTGTGGCCTAGTAAAAAAATTATTTTCAGAGCACTGGCAGTAGAGGTCGCTGTTGACCTTGATGCGCACCTGTAGGCCCCTTTCCATGTTTGAAGATGAGATGCTAAAATGCTCGATTTCTGTCAACCCAGGGCAGTCACTCCGCTGTACTGGAATGGAATTAAAACTTCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1506557 lncRNA downstream 1343 67069232 ~ 67069971 (-) True G1320090
TU1506501 lncRNA downstream 41628 67026419 ~ 67029686 (-) True G1320057
TU1506470 lncRNA downstream 73934 66996615 ~ 66997380 (-) True G1320031
TU1506238 lncRNA downstream 108259 66962738 ~ 66963055 (-) True G1319849
TU1506235 lncRNA downstream 111154 66959930 ~ 66960160 (-) True G1319846
TU1506553 lncRNA upstream 1612 67077245 ~ 67165860 (-) True G1320086
TU1506562 lncRNA upstream 17462 67093095 ~ 67094267 (-) True G1320095
TU1506565 lncRNA upstream 18780 67094413 ~ 67095337 (-) True G1320096
TU1506568 lncRNA upstream 21314 67096947 ~ 67097393 (-) False G1320098
TU1506569 lncRNA upstream 21314 67096947 ~ 67097393 (-) True G1320098
XM_021564036.2 mRNA downstream 128564 66940740 ~ 66942750 (-) False LOC110490598
XM_036945027.1 mRNA downstream 128564 66940740 ~ 66942750 (-) True LOC110490598
XM_036945011.1 mRNA downstream 130646 66924042 ~ 66940668 (-) False LOC110490597
XM_036945032.1 mRNA upstream 3673 67079306 ~ 67084694 (-) False LOC110511902
XM_036945033.1 mRNA upstream 3673 67079306 ~ 67084695 (-) False LOC110511902
XM_036945041.1 mRNA upstream 79791 67155424 ~ 67350136 (-) False LOC110501001
XM_036945037.1 mRNA upstream 79791 67155424 ~ 67350716 (-) False LOC110501001
XM_036945038.1 mRNA upstream 80960 67156593 ~ 67350715 (-) False LOC110501001
TU1506236 other downstream 110010 66960951 ~ 66961304 (-) True G1319847
TU1506125 other downstream 175622 66808447 ~ 66895692 (-) False LOC110490781
TU1506128 other downstream 203574 66863841 ~ 66867740 (-) True LOC110490781
TU1506127 other downstream 209033 66856179 ~ 66862281 (-) True G1319781
TU1505596 other downstream 789206 66279045 ~ 66282108 (-) True G1319357
TU1506555 other upstream 5148 67080781 ~ 67084605 (-) True LOC110511902
TU1506612 other upstream 117483 67193116 ~ 67193493 (-) True G1320139
TU1507110 other upstream 717392 67793025 ~ 67797835 (-) True LOC118938833
TU1508038 other upstream 996768 68072401 ~ 68176382 (-) True LOC110513021
TU1508586 other upstream 1955393 69031026 ~ 69073276 (-) False G1321652

Expression Profile