RNA id: TCONS_00043908


Basic Information

Item Value
RNA id TCONS_00043908
length 821
RNA type mRNA
GC content 0.50
exon number 7
gene id XLOC_022243
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 17431345 ~ 17451264 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCGCTCGGGTTCTGCTGTGGGCTTGTCAGGCGCTTTTGGATGTTTTGATAGAAGAGGGAAGACACGTTACCAGGTTTTTGCACAGTCCTCTCAATTCTTTTACCGTCAAGACAGCGTTTTGAAGAGCTAAACTCGACGACATGGACACCGCCAATCaagACATCAATCTGAACTCGCCACACAAAGGTCTGGGCTCGGACTCGATCTCAGACTTGCCTGAAGAGAGAGGCGCAGCAGCTGTGAGTCCTGGGACTCTCCCTCCAGGCCTGACAGAAGAAGAGGCAGAGGAACTCAGACTGGAGCTCACCAAGGTAGAGGAGGAGATTAACACCTTGCGGCAGGTGTTGTCAGCTAAAGAGCGCCATGCATCAGAGCTGAAGCGCAAACTGGGCCTCAGCCCCCTGACTGAGTTTAAACAGAACATCACTAAAAGCTGGCAAGATGTCCAGACCTCAAATGCGTATAAAAAGACTCAGGAAACGCTGTCTCAGGCTGGACAGAAGACCTCAGCTGCCCTCTCCACCGTTGGCACAGCCATCAGCAGGAAACTGGGTGACATGAGTAGCAACTACTCCATTCGTCATTCAATAAGTATGCCAACTATGAGGAACTCTCCAACCTTCAAGTCATTTGAGGACAAAGTTGGAAACATCAAGTATAAGGTGGTTGGAGGCAAAGCCAATGGTGAAAGTGCCCACTCTCCGAATGAGTCGGAACCCGCGCAGGAAAACGCTCCATTTTGAGAGCCCGCCTCTCTCCATCCAAACACTCATCTCATTTCTTTGTGAATCCTGATTACACCCACAACTCAGTTCTCCAAA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-822 Predicted to be active in cytoplasm. Orthologous to human TPD52L2 (TPD52 like 2).

Ensembl:

ensembl_id ENSDART00000136457

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043904 lncRNA downstream 2965 17427971 ~ 17429764 (-) True XLOC_022242
TCONS_00043902 lncRNA downstream 77027 17354153 ~ 17355702 (-) True XLOC_022241
TCONS_00043892 lncRNA downstream 470189 16961269 ~ 16962540 (-) False XLOC_022237
TCONS_00044724 lncRNA downstream 579782 16850836 ~ 16852947 (-) True XLOC_022235
TCONS_00043885 lncRNA downstream 695577 16735911 ~ 16737152 (-) True XLOC_022232
TCONS_00043919 lncRNA upstream 207233 17657994 ~ 17663102 (-) False XLOC_022247
TCONS_00043920 lncRNA upstream 207233 17657994 ~ 17839198 (-) False XLOC_022247
TCONS_00044725 lncRNA upstream 234153 17684914 ~ 17839121 (-) False XLOC_022247
TCONS_00044980 lncRNA upstream 234153 17684914 ~ 17839149 (-) True XLOC_022247
TCONS_00044981 lncRNA upstream 430262 17881023 ~ 17885851 (-) True XLOC_022251
TCONS_00043903 mRNA downstream 2954 17427838 ~ 17429775 (-) False XLOC_022242
TCONS_00043899 mRNA downstream 331369 17011454 ~ 17101360 (-) True XLOC_022238
TCONS_00043897 mRNA downstream 427946 16983363 ~ 17004783 (-) False XLOC_022237
TCONS_00043896 mRNA downstream 429196 16981929 ~ 17003533 (-) False XLOC_022237
TCONS_00043895 mRNA downstream 450744 16979462 ~ 16981985 (-) False XLOC_022237
TCONS_00043915 mRNA upstream 3930 17454691 ~ 17470146 (-) True XLOC_022244
TCONS_00043916 mRNA upstream 21941 17472702 ~ 17484555 (-) False XLOC_022245
TCONS_00043917 mRNA upstream 26639 17477400 ~ 17509656 (-) True XLOC_022245
TCONS_00043918 mRNA upstream 205029 17655790 ~ 17657348 (-) True XLOC_022246
TCONS_00043922 mRNA upstream 332211 17782972 ~ 17820755 (-) True XLOC_022249
TCONS_00043901 other downstream 256511 17176104 ~ 17176218 (-) True XLOC_022240
TCONS_00043900 other downstream 386345 17044294 ~ 17046384 (-) True XLOC_022239
TCONS_00043898 other downstream 448135 16983777 ~ 16984594 (-) True XLOC_022237
TCONS_00043893 other downstream 453814 16977930 ~ 16978915 (-) False XLOC_022237
TCONS_00043889 other downstream 468624 16961269 ~ 16964105 (-) False XLOC_022237
TCONS_00043921 other upstream 232057 17682818 ~ 17682932 (-) True XLOC_022248
TCONS_00043939 other upstream 612412 18063173 ~ 18063299 (-) True XLOC_022255
TCONS_00043945 other upstream 931695 18382456 ~ 18382551 (-) True XLOC_022260
TCONS_00043958 other upstream 1159255 18610016 ~ 18611010 (-) True XLOC_022266
TCONS_00043959 other upstream 1160366 18611127 ~ 18612421 (-) True XLOC_022267

Expression Profile

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