RNA id: TU1507110



Basic Information


Item Value
RNA id TU1507110
length 922
RNA type TUCP
GC content 0.52
exon number 8
gene id LOC118938833
representative True

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 67785217 ~ 67797863 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggaaGGTTGCATTTGGCGACGTGGAAGTGACTAGTCGTCTGTTGTGAGGCTGTACACCAACCACACTGATCCACAAACATTCCGTAACAATGATAAAGAAATTTGACAAGAAGGACGAAGAGTCTGGAAGTGGCTCTAACCCTTTCCAGCATCTTGAAAAGAGTGCAGTGTTGCAAGAGGCTCGCATCTTCAACGAGACTCCGATCAACCCCAGAAGATGTCTCCACATCCTCACCAAGATCATTTACCTACTCAACCAGGGGGAGCACTTTGGAACTATGGAGGCGACCGAGGCCTTCTTCGCAATGACCAGGCTCTTCCAGTCCAATGATCAAACCCTGAGAAGGATGTGCTACCTGACCATCAAGGAGATGGCCAACATCTCTGAGGATGTCATCATTGTCACCAGCAGCCTAACCAAGGACATGACTGGCAAGGAGGATGTGTACAGAGGACCTGCCATCAGAGCTCTCTGCAGGATCACggatACCACCATGCTGCAGGCCATTGAGAGATACATGAAACAGGCCATTGTTGACAAAGTGCCCAGTGTGTCCAGCTCTGCCCTGGTCTCATCTCTGcACATGGTTAAGATGAGCTACGACGTGGTGAAGCGCTGGGTGAACGAGGCACAGGAGGCAGCTTCCAGTGACAACATCATGGTCCAGTACCACGCCCTGGGCCTGCTGTACCACCTGAGGAAGAATGACCGACTGGCCGTATCCAAGATGCTCAACAAGTTCACCAAGTCTGGCCTCAAGTCCCCCTTTGCCTACTGCATGCTCATCCGCATCGCCAGCAAGCTGTTGGAGGAGACCGAGGCAGGACATGACAGTCCCCTGTTTGACTTCATTGAGAGCTGTCTGAGGAACAAGCATGAGATGGTGGTGTACGAGGCAGCCTCGGCCATAGTCCACATGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1507125 lncRNA downstream 682 67792140 ~ 67792343 (-) True G1320534
TU1507114 lncRNA downstream 58961 67733788 ~ 67734064 (-) True G1320523
TU1507095 lncRNA downstream 89144 67699187 ~ 67703881 (-) True G1320508
TU1507052 lncRNA downstream 141432 67650571 ~ 67651593 (-) True G1320478
TU1506915 lncRNA downstream 246876 67545893 ~ 67546149 (-) True G1320370
TU1507212 lncRNA upstream 12753 67810588 ~ 67811049 (-) False LOC110501000
TU1507261 lncRNA upstream 28955 67826790 ~ 67828937 (-) True G1320612
TU1507239 lncRNA upstream 41467 67839302 ~ 67839628 (-) True LOC110501000
TU1507277 lncRNA upstream 81503 67879338 ~ 67879591 (-) True G1320628
TU1507289 lncRNA upstream 113261 67911096 ~ 67911466 (-) True G1320640
XM_036945045.1 mRNA downstream 414330 67371382 ~ 67378695 (-) True LOC110499840
XM_036945044.1 mRNA downstream 414434 67371382 ~ 67378591 (-) False LOC110499840
XM_036945042.1 mRNA downstream 414456 67371382 ~ 67378569 (-) False LOC110499840
XM_036945043.1 mRNA downstream 414791 67371382 ~ 67378234 (-) False LOC110499840
XM_036945037.1 mRNA downstream 442309 67155424 ~ 67350716 (-) False LOC110501001
XM_036945073.1 mRNA upstream 3239 67801074 ~ 67803118 (-) True LOC118938834
XM_036945071.1 mRNA upstream 12748 67810583 ~ 67922050 (-) False LOC110501000
XM_036945072.1 mRNA upstream 12748 67810583 ~ 67922050 (-) False LOC110501000
XM_036945064.1 mRNA upstream 12748 67810583 ~ 67922051 (-) False LOC110501000
XM_036945065.1 mRNA upstream 12748 67810583 ~ 67922051 (-) False LOC110501000
TU1506612 other downstream 599532 67193116 ~ 67193493 (-) True G1320139
TU1506555 other downstream 708420 67080781 ~ 67084605 (-) True LOC110511902
TU1506236 other downstream 831721 66960951 ~ 66961304 (-) True G1319847
TU1506125 other downstream 897333 66808447 ~ 66895692 (-) False LOC110490781
TU1508038 other upstream 274566 68072401 ~ 68176382 (-) True LOC110513021
TU1508586 other upstream 1233191 69031026 ~ 69073276 (-) False G1321652
TU1508651 other upstream 1357691 69155526 ~ 69156999 (-) True LOC110490790
TU1508670 other upstream 1422468 69220303 ~ 69223028 (-) True G1321729
TU1509018 other upstream 1764475 69562310 ~ 69563040 (-) True G1321997

Expression Profile