RNA id: XM_036945075.1


Basic Information

Item Value
RNA id XM_036945075.1
length 2719
RNA type mRNA
GC content 0.54
exon number 20
gene id LOC110500996
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 67966234 ~ 67997921 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCGTTACTAAGCAACAGAGAACGCTATCTGCGCCAGCTGAGCCAACTTTCAAAATAGCTACCTACCGAGGCTAATTAGTTAATAAAAATATCCCCAAAGTATTCTCATGCCAAACAATTTCATCCAAAATGTCTTCTACTTCGACCATTTCCAATTTGCAAGATATCGGGAAGCAAACATCGCCCCAGTATTCCTCTGGGTCACCCACTTGCTACCCTCATGAGTCAGTGACACAGGAGACCACTGATGCGCAACCATTTCCTGCTGCTGTTCATCATCCGTGTGCAGACACGTTTTCAACCTccgaggaagagaaggaggagaagacaaTGGAGAAAAACGATGGTGTGTTGACTGAAGAGGAAGTTTCCAGCTGTTTATCCAACCTGGGACACTCTGCCACTGGACTAGAGCATGTCTACCAGTTCCTCTCTGCGCCTGGTCGAAATCTGAATAATGTGTCCATCCTTTGCAATTACGTCCACCTTCAAAAGCTAGAACTTCCTTACAACAAaataaaagATTTATCCTGTGTAAGCCACATGCCGTATCTCATCATCCTGGATGCCTCCCACAACCAACTCACCGACTTCTTTGGATTCCAGCCGCCCAAGAACCTCAAGGAGGTAAACTTTTCCCATAACCAGATGTCCGTGATGACACATTTGTCAGCCTACTCGTCTTTGAGTAAACTGAATCTGGACTACAACTGTTTCAGTGAGATCGGTGGTCTGCTGCATTGTGCCAGCCTCACACACCTCAGCCTGGCACACAACAAGATCTCCTGTATCAGAGGCCTGGACAACCTGCCAATCAAAGACCTCTGTCTGAGGGGGAATCAGATTGAGAAGATAGAGAATGTGGAGACTCTGAGAACCCTGCAGGTCCTGGATCTGTCTCTGAACCGCATCAGCAGTCTGTCAGGCCTGCAGAATCTCCATCTGCTGGGCTCCATCAATCTGGAGAGTAACCTGATCAGTGAAATCAAGGAGGCCACACACATCCATGACCTGTGCCTGCTCCGGGAGCTGAATCTGCAGAGAAACCTAGTCCAGGAGCAACTGGACTACAGACTGGCAGTGATCTTCCTCCTTCAACACCTGACTGGCCTGGACCAGGAGAAAGTCACAGTAGAGGAGAAGGTCTCGGCTGTTAACAAGTACGACCCTCCTCTGGAGGTAGTGGCAGCCAGGGAGCACATGAGTCACATGGTATACCAGCTGATGCAGCCCCAGGTCATCTACGATAGCACTCTGCCCAGTCTTGACTCTCCCTACCCCATGCTGGTGTTGACTGGGCCCCAGGCTTGTGGGAAGAGAGAGCTGGCCCACAAGCTCTGCCGAGAGTTCAACGACTTCTTCGCCTACGGAACCTGCCATACCACCAGGGGTCCCTACtttggagaggaggatgggagcgACTACCATTTTGTCACGGAGGAAGACTTTCAGAACATGATTCACATGGGTAAATTCCTCCAGACGATGCAGTATGCGGGCCACTGGTATGGTCTGTCTCGTGAGGCCATAGAAGACGTGGCCAGGGAGGGCTTGGCCTGCTGTGTGCACATGGAGCTGGAGGGCGTGTTCAGTCTGAAGAACAGCCACTTTGAGCCGCGTTACGTCCTGATGATCCCCACAGACAAGGAGCAGTACGGCAGGCGGCTGAGGACCAGAGCTCTGTACACCCAGACCCAGATAGATACGGCTGTAGCCCGCGTGGATACATACGTCCTGATCAACAGAGAGCGCCCAGGCTTCTTCGACAACGTCATCCCCTGTGatgaGCCAGTGGAGGCATACAGAACCCTGAGGCAGGTGGTGAAGGACtatctgggagtggaggagcagggaggagaggaccAGAGCACCACAGACACCCCCACAGAGTTGAAGAGGGACTCCCTAGTGGACGAGGCGCCCCCAGCCCCCTCCACCAGGCCAGAGACAGTCTTTATGTCCTGCTCCGCTCCAGACATGGACCCCTCAGACCACAACTGTAGGAAGTACTACAACAAGGTCCAGGCCCAGCTCACCCCACAGAAGACCTCAGCAGAGATGGCCTCCATCCACAGACGGCAGCAGCTGGTCAGAGAGGCTCTGATGGGGAAGAGTCCCAAAGCCTACACCCAGCTCTTCAAGAGgtgtgtTCACACAGCTCCATCACCATTGGCCTTTCAGATGCAGCGGGACCCCGCCCTCTCATCCCCCATGATGCCTAGAGCCAGCCATGACAGACAACACAACCACTCAGAGAATAGCAGCTCTGATGACTCCCGTGCTAGTTCTGGCCTGTCCATTCCCAGCTCAGCAGGGGCCTTCTCAGAGACAGCAGGGCCAGCCGGGTGTTCAGACCTGGGCTTGGACACCACCGTGGAGCCCCTGGATGTCTCCTCTCTGGGACACAACCTGGACATGCTGAAAGATCAAGTAGAATCTGGCCACACTCCTGACGCCCCTCGCCCCGGCTCCGAGCTCCTCTCTCCGGGCGCCACCGCCACCATGGCACGCCCAGGCTCCAACGCCAAACCCATCCTGCCACCTATCCTGTCGGGACGCAAAACCCCCGGACCCAGCCCTAAGCCCCAAACgctgagacatgagagagagagggagatgaggagtgaagaggtacaggagagaggtagaggaggagtgaagaggtacaggagagaggaagaggaggagtgaagaggtacaggagagaggaagaggagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1508055 lncRNA downstream 14896 67951111 ~ 67951338 (-) True G1321255
TU1508054 lncRNA downstream 16999 67948654 ~ 67949235 (-) True G1321254
TU1508053 lncRNA downstream 18247 67947691 ~ 67947987 (-) True G1321253
TU1508052 lncRNA downstream 18823 67946995 ~ 67947411 (-) True G1321252
TU1508048 lncRNA downstream 25030 67941004 ~ 67941204 (-) True G1321248
TU1508037 lncRNA upstream 621 67998539 ~ 68000235 (-) False LOC110513021
TU1508078 lncRNA upstream 3634 68001552 ~ 68001931 (-) True G1321277
TU1508079 lncRNA upstream 4527 68002445 ~ 68002723 (-) True G1321278
TU1508080 lncRNA upstream 7986 68005904 ~ 68006161 (-) True G1321279
TU1508086 lncRNA upstream 19386 68017304 ~ 68017799 (-) True G1321284
XM_036945065.1 mRNA downstream 44183 67810583 ~ 67922051 (-) False LOC110501000
XM_036945079.1 mRNA upstream 614 67998532 ~ 68239937 (-) False LOC110513021
XM_036945094.1 mRNA upstream 1086887 69084805 ~ 69114891 (-) False LOC110490613
XM_036945095.1 mRNA upstream 1086887 69084805 ~ 69114891 (-) True LOC110490613
XM_036945097.1 mRNA upstream 1120859 69118777 ~ 69127449 (-) False LOC110490606
XM_036945096.1 mRNA upstream 1120859 69118777 ~ 69127452 (-) False LOC110490606
TU1507110 other downstream 168399 67793025 ~ 67797835 (-) True LOC118938833
TU1506612 other downstream 772741 67193116 ~ 67193493 (-) True G1320139
TU1506555 other downstream 881629 67080781 ~ 67084605 (-) True LOC110511902
TU1506236 other downstream 1004930 66960951 ~ 66961304 (-) True G1319847
TU1506128 other downstream 1098494 66863841 ~ 66867740 (-) True LOC110490781
TU1508038 other upstream 74483 68072401 ~ 68176382 (-) True LOC110513021
TU1508586 other upstream 1033108 69031026 ~ 69073276 (-) False G1321652
TU1508651 other upstream 1157608 69155526 ~ 69156999 (-) True LOC110490790
TU1508670 other upstream 1222385 69220303 ~ 69223028 (-) True G1321729
TU1509018 other upstream 1564392 69562310 ~ 69563040 (-) True G1321997

Expression Profile