RNA id: XM_036945094.1


Basic Information

Item Value
RNA id XM_036945094.1
length 3529
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110490613
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 69084805 ~ 69114891 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGGCGGAGGGATAGCAGAAGCTTCAGGACAGTGAGAGCTCAGcagcgagagagaaggggtatACGTTGCTGCAGATAGAGTAGAGGACGTGGAAATATTTCGTTATACGCATTTGCGACGAAAGCAAATGTAAACTTTGGGATAATACAGCTAGACGTTTGAGCTGCCATCACTTTACGACTTGGTGTTCAACAGTGGAATATAAAAATGTCGTCTCCAAGTCCGGGTAAAAGGCGAATGGATACTGACGTGGTGAAACTCATCGAGAGCAAGCACGAAGTCACAATCCTCAGTGGACTCAATGAATTTGTAGTGAAGTTTTATGGACAACAAGGAACAGCGTACGAGGGGGGCGTATGGAAGGTGCGAGTAGATCTACCGGACAAATACCCTTTCAAATCCCCATCAATAGGATTCATGAATAAAATCTTCCATCCCAACATCGATGAAGCGTCAGGAACAGTGTGTTTAGATGTCATCAACCAGACGTGGACAGCCCTTTACGATCTCACCAATATCTTTGAGTCGTTCCTGCCTCAGCTGCTGGCTTACCCCAACCCCATCGACCCACTGAACGGAGACGCGGCCGCCATGTACCTCCACCGACCAGAGGAGTACAAACAGAAAATCAAAGAGTACATCCAGAAATATGCAACAGAGGAGGCTCtcaaggagcaggaggagggccAGGGCGATTCCTCATCGGAAAGCTCCATGTCGGATTTCTCTGAAGACGAAGCCCAGGATATGGAGTTGTAGTGATGGGAGACAACTCCCCTTTAAAACCAGAGACTGTATGATTTCCTAACCATGAGAAAGCAGACATCATATTCATATAagttgatttttttattttattattattattattattattgctaaaacAAGGATTTTTGTGGATATCAAGCCTCGGCGTATATCACACACCACCTGCTTTGTGTTTTTGCCATGTCCCAGTCGCGTTCTCCTCCTTCAATCCCTGTAAAGGTGTGTTGGACTTAGCAGTCCCCACATTCCACCGGTAGTTGGAATGTCCCCTTTGACCCGGTGACCTTCGGCCTTACCCTCACTGCACCAACAACCGGACAAAATGGAGACTAGCTCTATGGGCTGGGCTGAATAAGAGGTGGGAGGTGGGCACCGGGGGATTTCCCTTCTCTTTATCTCATGAATGTGTTGAAGAAGAGGAACTAGAGAGTTAGGTCATGTTCATGGTCATGGCAATTATGGTCCATGTCTTCAGCTGAATTCGTACCTGTCTGGATTAGATTTGAATTGGATACATCACCCTGCTGGCGTTGGCTGTCGACTTGTCCTGCTAGACAGCTGAATTCGTACCTGTCTGGATTAGATTTGAATTGGATACATCACCCTGCTGGCGTTGGCTGTCGACTTGTCCTCCTAGACAGATGATTGGGTATTTTAAAGTAATATGAAAGAGGGGAATTGCAGCTTCAATATCTATTTTCTTTCACCAATGTTGTTTTTCTGGTGTTCATTTGTCATTTGTGCTTTTCATTTGGCTGGGGTTAGGAGCTgcctatggtgtgtgtgtgcagcaccTAGCTTGTACAGTGATACTTCACCTTTCTCATTAGAGCCTTATGAACCCAGCCAGCGCGTCAGTCAAAGCGCTGACATCGCTCTGAGCCTGTCCGAGCTGGTGTGGCTGTCGGAATACCTGTACCCCTTTAGAAAAGTACGTCACTTCCTGGAACGCCATAGGTATTATGTATCCACTGAAGTTTGTTAGGGGTGAATACTGCCCAGAAGGAGGGATTGAACGCTGATGTGTTGGAAAGTGAGGTAGAAGTGGCCGACCTTACTGGCTACAGCACAGACACCCAACAGATCCTCCTCTGATCTGTTTTTGTAAAAGAAAAGAAAAGTTAAAGGAACGTAGAAAAAAATCACAAGAAGcatttttgtataaaaaaaataaaagcacaAGGTTTTATTTCCTACAAACTCCTCCCTCCTAGATGATTTGGACCTTGTTTATTTTGGTGGCAAAGACAGGATTTTTTTTGGGTGGGGGGGACATCATTCTGTACAGTTTGGGCATGATCCAGAAGTGATGTTGTGTTGGTCTGTATTGCGCTAGGCTAGTATAGGGCTCAACTAAAGTAGTACTGCTTGTGTGGCTACTGTCTGAAGTATTGAGTTGCGTTGTGTACAAGGCTTAGTGATTTACCTGGGTTACCCTTCACTCTTAGATGGGGGGAAAATGCAGGGGGGGATATCTGCAGGTCTTTTTTTGGCTAACATTGTTGAAATGACCAACTTTGCCTTTTGCTCGCGCTAAACTATGATATGTGTTTTTGACTTGATGTAGCGATAGTTAGTTTACTGGGCGGTGTCTTCAACTAAAGACATGTATGGGTCTGATAACTAAAACAACAATAGCTGATTTTAAGTTTGAAGGTAATGTCCATTGTAGGGTTTACATCAGATATAACATGGATCTATACCTGCTGGTCCCCTTCAGAGATGTACAGATCAACGTGAGAGTGATTCCAGACAATGGCAATGAATTGACTGGTGGAGAAACTAGACTGAATGTATGATAGTCTGTGCAAAACAAAAGCATTGGGCCCGATGAAAGTATCAGACAATGTGCAGTGTGATCAAGGCCACATTGGGATAGAGCTTGGATGGGAGACCATGTTTTTCCTTGTTTTTAATTTCAGTGTTCCCTAAAAGCTTGACTGTTCAAGGCTCCTGGATAAAGATGGTCAACTATGGATTGGGTTCCAATCCATTGCCTGGTGTAAGACAGGAAAGTGGGTTTGGGGTTCCCATGTTTCCTCACAGGCCAAATGGAGCCTGCAAAAACAGAATGATGTCACAAGGATACGCAGCAGAGTACTTTGCAATTTGGCTTCTGCCGTTTCCTGAGCTGCCTATATTTATTCACTCTATATTGAAACCTTCGCTTTCCTTTCTCGTTTTTAATCTAATCATTTACAGGCACCGCTGTTAAAACAAAGGTGTATGTACTTAGGCTTCAGCCAAATTGTGTCATGCTGAAGAGAATTAGAACTTGAACTTTCTTTCTGTTTTAAGTATTCAGTTTGGATTTAATGATTCTGTTTTTTCCACATTTATGCAGTATTGTACTAAAGTGAAAAAGACAGAGAAATAAATCCCATCAGAATAAGTGGAGAAAGGCAATGGAGGCCATTTTGTGTTTGGACACTTGCATAGGGGAGAAAATGTGATATTTTGGTATTTTTAAAGAGTGTTGTCCTTGTTATAACTATGTTGTTTTATTTTCAAGCAGAAGTGTCAATGTTCCCACAAACAGGGTGATCCAAAGACGACATGTACTCAGCTGTGGTCTGTTGCTATGGGAAACAGTTTTGTTTTCTttcactcttttttttttattccccCCCCAAACTAATTCAGTGATGAGGACTATTTATAACCTTTGTTTTTCTGCTTGTTTTTAATTCCCAAGTCGAGGACTCAATGACACTTACAATCCAAAAATCTCCAATAAACATGAGTGTGCTTCCGTTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1508626 lncRNA downstream 2725 69081729 ~ 69082080 (-) True G1321688
TU1508584 lncRNA downstream 25490 69058021 ~ 69059315 (-) True G1321652
TU1508611 lncRNA downstream 30554 69053909 ~ 69054251 (-) True G1321677
TU1508591 lncRNA downstream 48772 69005326 ~ 69036033 (-) True G1321657
TU1508602 lncRNA downstream 54296 69029708 ~ 69030509 (-) True G1321668
TU1508632 lncRNA upstream 4084 69118975 ~ 69120412 (-) False LOC110490606
TU1508633 lncRNA upstream 7948 69122839 ~ 69127351 (-) False LOC110490606
TU1508634 lncRNA upstream 8004 69122895 ~ 69127351 (-) True LOC110490606
TU1508661 lncRNA upstream 55271 69170162 ~ 69170509 (-) True G1321720
TU1508657 lncRNA upstream 69983 69184874 ~ 69186350 (-) True LOC110490615
XM_036945079.1 mRNA downstream 844868 67998532 ~ 68239937 (-) False LOC110513021
XM_036945076.1 mRNA downstream 1086884 67966234 ~ 67997921 (-) True LOC110500996
XM_036945074.1 mRNA downstream 1086885 67966234 ~ 67997920 (-) False LOC110500996
XM_036945075.1 mRNA downstream 1086887 67966234 ~ 67997918 (-) False LOC110500996
XM_036945077.1 mRNA downstream 1087187 67966234 ~ 67997618 (-) False LOC110500996
XM_036945097.1 mRNA upstream 3886 69118777 ~ 69127449 (-) False LOC110490606
XM_036945096.1 mRNA upstream 3886 69118777 ~ 69127452 (-) False LOC110490606
XM_036945099.1 mRNA upstream 34586 69149477 ~ 69162598 (-) False LOC110490790
XM_036945098.1 mRNA upstream 34586 69149477 ~ 69163694 (-) False LOC110490790
XM_036945102.1 mRNA upstream 49264 69164155 ~ 69184500 (-) True smo
TU1508586 other downstream 11529 69031026 ~ 69073276 (-) False G1321652
TU1508038 other downstream 908423 68072401 ~ 68176382 (-) True LOC110513021
TU1507110 other downstream 1286970 67793025 ~ 67797835 (-) True LOC118938833
TU1506612 other downstream 1891312 67193116 ~ 67193493 (-) True G1320139
TU1506555 other downstream 2000200 67080781 ~ 67084605 (-) True LOC110511902
TU1508651 other upstream 40635 69155526 ~ 69156999 (-) True LOC110490790
TU1508670 other upstream 105412 69220303 ~ 69223028 (-) True G1321729
TU1509018 other upstream 447419 69562310 ~ 69563040 (-) True G1321997
TU1509441 other upstream 783794 69898685 ~ 69899703 (-) True G1322348
TU1510302 other upstream 1421561 70536452 ~ 70537139 (-) True G1323036

Expression Profile