RNA id: XM_036945099.1


Basic Information

Item Value
RNA id XM_036945099.1
length 2782
RNA type mRNA
GC content 0.51
exon number 20
gene id LOC110490790
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 69149477 ~ 69163694 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAACTGTGAGTCTATTGATTGACTGGCCCATCTCATAATTGAAGTTGCATGAAGACGATGTCACATGTTGAAAAGAATCCCTTCCCTGTTCAGTTAGGAGTCTTGGGACAGTGATGCTCATCTTAAGTCCTGTGGAGATGTATACCCAATGGGACCATGACCCCAGGGTCTACCGCCGTACATCCCAGTGTGACCGACTGTGTGTGGACATTGGCAGTCATGTGGCCGAGACCCCTTCCCCAGATGTCTCCCACCAATACACCCCCAAATGTTTGTCTGCACACAAAGGAGGCACCACTCCATGTCACTATGGGGAAGAGGTTTGGCAGGATGGCTCGAGCTTGAGGACCACCATCCGAGCAGAGAATGAAGTCGAGGCAAACAAACTGGCCAACAACTACAGGTTTGGCTTCAGAAAGTGGAAGAGTCACGTGACTGAGAGGCCCATCGAGGACAGGTCGGACATTGTGAGGGAGCTGTACTCAGAGCTGAACTTTGTCAGACCCCAAGGTTCATTGATCACTTGTGGAAACATCGCATACTTGATTTTATTTGGATGGTGGATCTCTTTAGCCTACCTCTTGGTCTGTGTCCTAATGTTTCTGACCATCATTGGAGTTCCTTATGGGAAGCTGTGTTGGAAGTTATCATGCTACTTTCTGTGGCCCTTTGGGAAGTCCATACTAAAGCCCAGAAGCCTGGTCAGGCGATGCTGTGTGAAGTTCCCTCACTGCGAGGCCATCCCAGAGGAATCTGACTCAAAGGAGGTGAAGGAGTCTACACCCCTGCTCATGCCCCCTTCTGTCCCCATCGAGGTCCCCCCACAACGGACGCGTTACTGGTGTCGTGTCAGTACCTATGTGTGGTTGTTGCTAGGCTACCCTCTCCTGGGGCTGATCCACAGCCTGGCCTGCTTCCTCTCCTGGATCCTGGTCTTCACCATCCCTGTGGCCAAGATGAATGCCCGCACCCTGGCCATCATCCTCCTCATGCCCCCTGAGGACGTCCACATCCACCGGCTGAAAAAGCCGCAAGGGTGTGATAGCCAAGTGCTTCTCTGTTGCTACCACGCCTTCAACTGGTACTACTACAAATACACCTTGGACGGAATCAATGTGTTCGCTGTCAACCTGCTGCCCCTGGTCATCACAACCCTGGTGGTCGGCTACGTGGACACAGAGAACCAGTTTGTCAGCTCGGAGGCCAAGTTCGCCGCTGCCGTCAGCTCCATCATCCCACTGTCTTATTATATCGGCATGGGCATCGCCAGtatctcAGCCCAGAGTAACTTTGCGGTGGGAGCAGTGGTTAACGCCACGTTTGGCTCCATCACAGAGATGACCTTCTACATCACTGCCCTGTTGAGGGGTCACAAGGCCGGCACCAAGTGCTATGAGGAGATTGTCAAGGCTGCTCTCACTGGAACCCTGCTGGGCTGTATTCTCTTTATCCCAGGTATCAGCATGATCATCGGGGGCTTTAAACACAGGGAGCAGAGGTTCAACAGCCGCTCTGCAGGGGTCAGCTCAGCACTGCTCTTCATATCAGTAGGAGGCGTATTTGCCCCAACCCTGTTCTCCAAGGCCTACGGTAGCCTGGTGTGTGCGGGCTGCTCCAGCTCTCAAGCCAACACCAGCGGGCCCTTTACCTGTATGGACTGCCACTATGACATGAGTGGAAGTAACGAACCCTTATATCTCAGACATATTGAGCCTCTGGTATACACCATCTCCGTGTTGCTGCCCTCCGCCTACCTGATTGGCCTCATCTTCACCCTGAAGACCCACTCCCACATCTACGACATCCAAGTCAGTGACGTGCACGACCACCACCAGGGTCAGTGCCCACCGGGGGGCGCCAGCGgtggtcaCGGTACTGTCCACTGGTCCAGGTTGAGGGCTCTGTCTGTGCTGATCATGGCCACGCTGCTAATGGCTGCCTGTGCCGACCTCACCACGGAGCACATCAAACCCATCCTCGACCACTCCGCCATCTCCCAGTATTTCATCGGCGTGACCGTGTTGGCGATGGTGCCGGAAATTCCCGAGATCTTCAACGGAATCCAGTTTGCCCTGCAGAATAACATCAGCCTCAGCTTGGAGGTGGGAAACTGCATAGCAGTGCAAGTCTGCATGATTCAGATTCCCTTACTCATCTTGTTCAACACTTTTTATGATGTGGGATTCGTGCTCCTGTTCAGTGACTTGCATCTTTGGGCCAGCATCTTTAGTGTGATTGTGGTCAACTACATTTTCATGGATGGCAAGTCTGACTACTTTCAGGGGACTGCTTTGGTGGTGGTTTACCTCATTCTACTGGCGTTGTACTTTTTCGCCCCATCACCCCACGCCTGTTGAGCTGCTCTGCAAAGAACAAACTTCAACTCCTAGAGTCCTTTCAGTCACTATTTACAGGAGCTGCTTTGTTTGTGTTAACTATTTCGATGCCATGTCATATTCATAAGGGCTCGCAGCGGGAACTCCAGGTAGTCCCTCTCTGTTGCAATCTGTTTTCTTCCttttgtgcctaatgaacatgacccagttcTGGGCATCAATGGCCCTTTACCTTTGGAATTATTTGCATTATGACTTCCAAATTAACATTCCTATACTGCACATCCGGGGTGTATGTGAACTATATGTAGGAGATGTGTTTTCAGTAGGAGTTTGGTAGATTAAAATGCATATGTTAAAGCAGGGTATGTTAATATTGAATTTATAAAGTGGTCACAATTGTGCTTCACATTCATTGGCCTTTGGTTATTAAGCTGGATTCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1508633 lncRNA downstream 22126 69122839 ~ 69127351 (-) False LOC110490606
TU1508634 lncRNA downstream 22126 69122895 ~ 69127351 (-) True LOC110490606
TU1508632 lncRNA downstream 29065 69118975 ~ 69120412 (-) False LOC110490606
TU1508589 lncRNA downstream 46142 69057052 ~ 69103335 (-) True G1321655
TU1508626 lncRNA downstream 67397 69081729 ~ 69082080 (-) True G1321688
TU1508661 lncRNA upstream 7564 69170162 ~ 69170509 (-) True G1321720
TU1508657 lncRNA upstream 22276 69184874 ~ 69186350 (-) True LOC110490615
TU1508671 lncRNA upstream 50843 69213441 ~ 69213663 (-) True G1321730
TU1508680 lncRNA upstream 88637 69251235 ~ 69251458 (-) True G1321739
TU1508681 lncRNA upstream 89363 69251961 ~ 69252193 (-) True G1321740
XM_036945096.1 mRNA downstream 22025 69118777 ~ 69127452 (-) False LOC110490606
XM_036945097.1 mRNA downstream 22028 69118777 ~ 69127449 (-) False LOC110490606
XM_036945094.1 mRNA downstream 34586 69084805 ~ 69114891 (-) False LOC110490613
XM_036945095.1 mRNA downstream 34586 69084805 ~ 69114891 (-) True LOC110490613
XM_036945079.1 mRNA downstream 909540 67998532 ~ 68239937 (-) False LOC110513021
XM_036945102.1 mRNA upstream 1557 69164155 ~ 69184500 (-) True smo
XM_036945108.1 mRNA upstream 22057 69184655 ~ 69201940 (-) False LOC110490615
XM_036945111.1 mRNA upstream 60473 69223071 ~ 69227704 (-) True LOC110490619
XM_036945110.1 mRNA upstream 71115 69233713 ~ 69237810 (-) True LOC110490620
XM_036945113.1 mRNA upstream 170622 69333220 ~ 69417060 (-) False LOC110490621
TU1508586 other downstream 76201 69031026 ~ 69073276 (-) False G1321652
TU1508038 other downstream 973095 68072401 ~ 68176382 (-) True LOC110513021
TU1507110 other downstream 1351642 67793025 ~ 67797835 (-) True LOC118938833
TU1506612 other downstream 1955984 67193116 ~ 67193493 (-) True G1320139
TU1506555 other downstream 2064872 67080781 ~ 67084605 (-) True LOC110511902
TU1508670 other upstream 57705 69220303 ~ 69223028 (-) True G1321729
TU1509018 other upstream 399712 69562310 ~ 69563040 (-) True G1321997
TU1509441 other upstream 736087 69898685 ~ 69899703 (-) True G1322348
TU1510302 other upstream 1373854 70536452 ~ 70537139 (-) True G1323036
TU1510280 other upstream 1380758 70543356 ~ 70545220 (-) True LOC110490645

Expression Profile