RNA id: XM_036945108.1


Basic Information

Item Value
RNA id XM_036945108.1
length 3939
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC110490615
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 69184655 ~ 69201940 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGCACAATACTGAGAAAGACGCCCTCTTTACAAACCCAAGGTTGCGCTGCTGCTGTAGGCTTTTGATCGTGTCTCTGTTGTGTTTGAAGCCTATTTTCTCTAGACTTGTCTGAATAAGGAAATGTAATAGGAATCCAGCACCACCGAGGGTGAGAAGTGACTCGCTCTACAACGTAGATTACTGTAATTTACTtcgtaaataaaaaaaagtagctATAAACGCACGTATGAATGCTTTGATTTACCTGGACTATTGCGGAAAGACCAAGGAAGGTGATAGCCAACATTTACGCACGGATTGGGTATTCTGATTTTTAACCATGGGGAAAAGAGCCGCGCTGGCGACTTACGATAAAGAGTTCAGCTTTGTCAGCCCAGTTGTCAAATATCTACTTTTCCTTTTTAATTTAATATTTTGGATGATCTCATTGGTGTTGATGTCTATTGGCATTTACGCGAGGATGATGAAACATGCCGaGGCAGCCATGGCCTGTCTAGCGGTGGACCCTGCCATCCTGCTGCTGATCGTGGGGGTGCTCATGTTCTTCATCACCTTCTGTGGCTGTGTGGGCTCCCTCAGAGAAAACATCTGCCTCCTACAGACATTCTGCATCTTCCTGACTATCATCTTTCTGCTGCAGCTAGCTGCAGGTGTCCTGGGCTTCGTCTTCTCAGATAAGGCACGGAATAAAGTGAGTGAGATTATCAACAATGCCATCGTTCATTATAGGGATGACATTGACCTACAGAACCTCATCGACTTTGGTCAGAAAGAGTTCAGCTGTTGTGGAGGTGTCACCTACACCGACTGGTCTCAGAACATGTACTTCAACTGCACCACAGACAACCGCAGTCGAGAGCGCTGCTCTGTTCCCTTCTCCTGCTGCCTGCTGTCTAAAGatgaggcggTCATTAACACAATGTGTGGTCAGGGGATGCAGGAGCTGCCATTCCTGCAGGCTGGTGCCTTCATCCACACCAATGGCTGCATCGACAAGCTGGTCAACTGGATCCACAGCAACCTGTTCATGCTAGGGGGCATCGCCCTGGGTCTGGCCATCCCACAGCTGGTGGGGATCCTCTTGTCTCAGATTCTGATCAACCAGATAAAGGACCAGATTGAGCTTCAGAACTACAACCTGCAGCACCGTACTGACCCTTGGCAGTAACCTGGCATGATCAGGTCCTACCCGATCAAACTGGACCAGGACTAGGTCATCAACCCCAGGGTCACCCAGGGGTTGTGGGAGTCTGGAATTCTACCCCCTTCTGCTGGATGGGGCTCAAGCTTTCATGTAGATGGTGTTCATTTTCAAGGCTGCTTGATCATTTCAATGGTGCAAGGACTGGCTTTGAGGCCAAAGATTCTGGTTGGATGATCCACCATTTGACAACAGTTGAGGTAGTCTGCTCTCTTTCTGCGTTCTTGACTCTCTTGCAtgtctatttttgttcagtatatattctaaccaactgagctaccaGAACCAACTGAGCTACCAGTGAAATGGCTGAGAAACCAAGGTTCCGAAAAGGTCCAGATGCCTGGACAGTGTCAATGTGTGCTTGTTTCGTTTTAGCTCACCCAGTATCCTGGATGGGTGGAGTTTTCACTTTATGACCAATGGAATGGTCAATGTTGAAACTCTGCCCACCCTGTGCCCCAGGGGAGCTAAAAGGAACGCATCTAATCAGGAAGTACTCCAGCCAGACAGCCAATGGAGAACTCCTCCATTCACAGCTATTCGTCATTTGACTCATCTCAAATATGTCACGATCTGTAATTTATTGAAAAggggaaaaaaaaacagcaaCCGGAGTCCAAACCCTGCTGAAATAATGTAGACTCTGTCCAGTTACTTTTTTGTCAATGCCGTTTACAACATTGATCTGTTATTTATATCCATCCAGTTATCCGCTAATACTCTCATAGAGTTGAGAACAAGACAATTCTGTCGGCCCTTCTCAAATATGGAAGAGCAAACGCAAGTAAAGTAATAAAGCTCATTAGCTTTACAGTCAATTTAGCTTGTGTGTATGTTAAATCTCCCAACTATAGTTTGCCATGCATGCTATAACAAGTTTTATAAACTGGGTTGTTTGATCCCTGAAGCCTTTCTTTTTACTGCGccaattatgttggtaaccagtttgaaatagcaataaggcaccttgggggtttgtggtatatggccaatataccacggctaagggctgtatccaggcactcttgcataagaacagcccttagccgtggtatattggcgatataccacaccccctcgagccttattgcttaaataaatcattgcaCCTACAGCCTTTACAGTAAAGTGTTACCCAATTGATTTCTACACATTTTAAGGGATATTACAATTGAGTTTTACATCAAATCCATTCACACAGAGTAAATTGTTGTTGTCCCTttacctccagaacagcctgaattcttcagggcataaattctacaaggtgtggcattcaaacgttgctctattggtatcaagggacttaATGtttgccaggaaaacattccccacaccattacaccaccgccaccagcatgtatcgttgacaccaggcaggatggagccatggactcatgctgcttacgccaaatcctgactcgtTGGACCagacaatgtttttccactcctcagttgtccagtgttggtgatcgcgtccccactggagccgcttcttcttgtttttagctgataggagtggaacctggtgtggtcatctgctgcaatagcccatccgtgacaaggacctaCGAGTTGTGCGTTTCGAGAtgccgcctgttagcttgcacgagtTTTGTTTGTctcaccattctcggtaaaccctagacaagCCCTGTTTCTGAGATCCTGGAACCGGCACACCTGGCAtcgacgatcataccacgctcaaagtcacttaggtgactcgttttgcccattctaacattcaatcgaCAATAACTGAATGCCTATCTGCATGCTTTATAGAGCAAGCCATTGACAAgggactcactgtctgtaggagcgacccattttcgtgaacggggtGGTTTACCTAATAATCTGGCCACTAAGTGTATATTTCAAGCTAAATTGACTGTAAATACATTCCTTTCAATAAAGCATATCTTTTGGATATGAAGCATTGTGGGTATCCATACAGACCAATAATGTAATTGTAGTTTATTACTCACTGCTACTAGGGGATTTCCCCATTTGAAAGCGCAACAGAAAGGCCTGATTTTATAATAAACAGTCTTATTTTCCGTAACGCCTTTTACACAAGCACTGGTGTTTAGATTGGCAACACTGGAGTTTACACTAATGCTGTGACTCTCCATAACATAACCATGTTGGGCCGTCGGCTAGCCCTGTTGGCATTTCCCCTCAcaggggttgtgttcattagagcACGCGACGGAAAATGAAATTGAGCGCTTCTTATGGGACAAGTCCTGTTTTAGTCCGTTTTgttcctaatgaacatgacccagtaaGGTCCACTGGGAATAGCAGTTATTTTTTCTCAAAATGTGGGTCAACATACTGTTACTGGTCAAGACTACTGGTTAGCACTGTATTTAAACGGTACAGGTGGGTGTGGAATTCATTCTAGGAACTGACCCATGTATAATCCTAAGAATTAACATTAAAAAACAATTTTACATGTCAAAATTAGTTTCACAATTCCCCTTAGGTACAGAGAGTATTTACTTTGACTCTACGTGGTAAAATAGTCTTCACATAAGAGAGTAATTACCATCTTGTGAATTCTTTATTTGTTTCTTTGGGAATTATCACAACAAGCACTCCAATCCATGTATCAGCTAGTTGGTTACCAATTGTGTTGAATTAATGTAATTAATGCCAGAAACTACCCAATGACACCATTTCTAATTGTCCTAATAAACGGCAGGTAAATAGCAGTGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1508661 lncRNA downstream 14146 69170162 ~ 69170509 (-) True G1321720
TU1508633 lncRNA downstream 57304 69122839 ~ 69127351 (-) False LOC110490606
TU1508634 lncRNA downstream 57304 69122895 ~ 69127351 (-) True LOC110490606
TU1508632 lncRNA downstream 64243 69118975 ~ 69120412 (-) False LOC110490606
TU1508626 lncRNA downstream 102575 69081729 ~ 69082080 (-) True G1321688
TU1508671 lncRNA upstream 11501 69213441 ~ 69213663 (-) True G1321730
TU1508680 lncRNA upstream 49295 69251235 ~ 69251458 (-) True G1321739
TU1508681 lncRNA upstream 50021 69251961 ~ 69252193 (-) True G1321740
TU1508688 lncRNA upstream 65652 69267592 ~ 69267847 (-) True G1321747
TU1508689 lncRNA upstream 66111 69268051 ~ 69268455 (-) True G1321748
XM_036945102.1 mRNA downstream 155 69164155 ~ 69184500 (-) True smo
XM_036945098.1 mRNA downstream 20961 69149477 ~ 69163694 (-) False LOC110490790
XM_036945099.1 mRNA downstream 22057 69149477 ~ 69162598 (-) False LOC110490790
XM_036945096.1 mRNA downstream 57203 69118777 ~ 69127452 (-) False LOC110490606
XM_036945097.1 mRNA downstream 57206 69118777 ~ 69127449 (-) False LOC110490606
XM_036945111.1 mRNA upstream 21131 69223071 ~ 69227704 (-) True LOC110490619
XM_036945110.1 mRNA upstream 31773 69233713 ~ 69237810 (-) True LOC110490620
XM_036945113.1 mRNA upstream 131280 69333220 ~ 69417060 (-) False LOC110490621
XM_036945112.1 mRNA upstream 135762 69337702 ~ 69417065 (-) False LOC110490621
XM_036945114.1 mRNA upstream 222900 69424840 ~ 69430808 (-) True LOC110499783
TU1508651 other downstream 27656 69155526 ~ 69156999 (-) True LOC110490790
TU1508586 other downstream 111379 69031026 ~ 69073276 (-) False G1321652
TU1508038 other downstream 1008273 68072401 ~ 68176382 (-) True LOC110513021
TU1507110 other downstream 1386820 67793025 ~ 67797835 (-) True LOC118938833
TU1506612 other downstream 1991162 67193116 ~ 67193493 (-) True G1320139
TU1508670 other upstream 18363 69220303 ~ 69223028 (-) True G1321729
TU1509018 other upstream 360370 69562310 ~ 69563040 (-) True G1321997
TU1509441 other upstream 696745 69898685 ~ 69899703 (-) True G1322348
TU1510302 other upstream 1334512 70536452 ~ 70537139 (-) True G1323036
TU1510280 other upstream 1341416 70543356 ~ 70545220 (-) True LOC110490645

Expression Profile