RNA id: XM_036945113.1


Basic Information

Item Value
RNA id XM_036945113.1
length 4146
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC110490621
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 69333220 ~ 69417065 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTATGAAATGTAGGACCACACTCTGTGATGGAAATAGAACGGGATCCACATGAGACATGTTTCTCAGTCAAGCAATCTGACCTGTTGAGAACACTCACGTTCAACATCTTATTTCGGCGAATcataaaagctgaaaaaagtTGCACTAGATATTCGTTGGCATAGATTTGAACTATTTTGATTGCCAATCCAAATGTAATGAGTGATCGTTGCTACATAGCAACATGAGCACGTGTGAGAGGATCGCTAGtaacacggacgcacacacacacactatagcaaCAGACAACCTGTGTGCAGAAAGGGAGAGGGTGTGCCCTTGACGTCGTTTCTCGTCAAAGACTCACATTTCGGAGAGAACCATATCCAGGTTTGCTTACTTGCTATTCACCACGGCATTGTCATGACTTTAACGAAAAGGGCATAGAGCTCAAGGTTACAAATCAATAATTGGAATGGTTTCGTTTGACTTCACCTGTCCAAGTGTGGAGCGGAGAAGAGAGTCAAGACACCCCCAAGGCACACATCACTAGCGCTGCCTGTGCTTGGAGCTACTGGCTGACAGATCCTTCGCACAAGGAGGAACTAGAGGGAGTCTGACAAGCGATAAGATCCTCTCTTCCaaatcaccaacaacgatgagattGGTAAAGCACCTTCACCAAGCGTAATGAGAGCTCCAGGCTGGATCTGGAGTGGCTGCTCTCAGCTGAAACCAAAAGGGTTTTCGTGAGATTTTCTAACCCAACTGGGTGTGTACAGCACCGTGCCCGCTGTTACTCTGGACTGCACTCGATATACCTTATTTACCAAGTCATGTCTTATACAGAGCGATGGGTAAGTTCGACGACAACGAGAGGATAATCCTCAACGTTGGGGGAACCAGGCACGAGACGTACAAGAACACGCTGAGGACACTGCCGGGGACTCGGCTGGCCCTTCTTGCCTCCGATTCTGACATCGAGTCCGTTTTGGATCAGCTGCAACAAGTCCCCGGCTTCATAGAGTACAACACGCGGAACAACGAATACTTTTTTGACCGCCACCCAGGGGTATTCGCTTATGTCCTTAACTACTATCGAACCGGGAAACTCCATTGCCCAGCAGATGTTTGTGGTCCGCTGTTCGAGGAAGAGCTGTCCTTCTGGGGAATCGATGAGACTGACGTGGAGCCTTGCTGCTGGATGACCTATCGCCAACACAGGGACGCCGAGGAGGCGCTCGATGTGTTCGACATAAACGTTGACAATGGAGACGACGACGAAGAGACGGGGAAAAGACTCGGCATTGAGGACGTGGTTGATCCTAATATCAGCCGCTGGAAAAAGTGGCGACCTGTGATTTGGAATCTATTTGAGGATCCCTATTCTTCCAGAGCGGCCAGGtTTGTGGCCTTTGCCTCCTTGTTCTTCATCCTGGTCTCGATTACCACCTTCTGcctggagacccatgaggcattcaacaccatcaccatcatcaacaaGTCTGAGGCGGTGCTCAACGGCAGCCTGCCGGACCTGGGTCCTGATTACATTATCGAGACGGACCCAGCTCTCACCTACGTAGAGGGTGTCTGCGTTCTTTGGTTCACCCTGGAGTTCATGGTGCGTGTCATCTTCAGCCCAGACAAGCTGGAGTTTGTCAAGAGCCTGCTCAACATAATCGACTTTGTGGCTATCCTGCCTTTCTACCTGGAGGTAGGCTTAAGCGGACTGTCATCTAAAGCAGCTAAGGACGTCTTGGGCTTCCTCAGAGTGGTAAGGTTTGTCAGGATCCTGCGTATCTTCAAGCTGACGCGACACTTCGTGGGGCTGCGGGTGCTGGGTCACACCTTGAAGGCTAGCACCAACgagttcctcctcctcatcatcttcCTCGCCCTAGGTGTGCTTATCTTCGCCACCGCAATCTACTACGCCGAGCGCATCGGCGCCAACCCCAACGACCCCACGGCTGGCGAACACACCATGTTCAAGAACATCCCCATCGGCTTCTGGTGGGCCGTGGTCACCATGACCACTCTGGGTTATGGTGACATGTACCCGCAGACGTGGTCGGGCATGCTGGTGGGCGCGCTGTGCGCCCTGGCGGGCGTGCTGACGATAGCCATGCCTGTGCCCGTCATCGTCAACAACTTTGGAATGTACTACTCGCTGGCCATGGCCAAGCAGAAGCTTCCCAAGAAGAGGAAGAGGCACATCCCCCAGGTCGCACTGGGGGGATCCCCAACCTGCCTCAAAGTAGACCTCAACACCACCTGCAACAGCCCCCAGGGGGACCTCTGCAACATGCAGGGGAGCAGGGTGCTGGAGCGCAACCAATCAGTGCTGTCAGGGGACGGCAGTGGAGGCAGTGATCTCACCATGTCCCCCAGCACAGAGGAGAGGGTCCCCATGCGCAGGTCCAGCACCCCAGAGCAGGAGCGGAGGAGTGGGGGGACGTGCTTCCTGCTGGCTGCCAGTGACTACACCTGCCCTGCCGACGGTGGGGTCAGGAAGACAGATAACTGCAAAGAGATTGTCTTTACTGGTTTCACGCAAGCAGAGAGCAGCATTCTTTAATTGCTGGGGGAAGGCACATCCCTGGTGGAAAGCTGTTTACGTGTCCTATTGGAATGACAGCAGTCCTCAGCCAATCAGTGGACTAACAAGACCTATTGGTGTGTGGATCCTGTTGGATCACACAGCGTCACTCAAGGACGTGAACCAACCAGAACACTCACATCGGTGAAGGATTGTTGACTGACAAGCGTCAGGTCCAATGACGCTGCCTGGGAAAACAGGAACTGTCCAAGACTGAGGTCAATTGGAATTCTGGGAATAGATGGGACAGGGGAAGTTGTCTTTTTCCCAGATTCTCAATGTCATGGATATTGAGTGAAGCATAAAACTGtcacaagaagaagaaaaaggacCCTTCTTGGAAGACGAGGCCAGCTACTTTATCTAGATATTGTGTTTGTAAATAATAACATGATACAGCACATGGGTCAAGGAgctcctttctctctcatctgtcctctGGATTGCGAGCCAGGTACAAGGTCCTGCTTAGACCTCCAGATGAATCAGTCTCCGTGGTTTCCCTCCTCGTAATCAGTGTTATTATGATGCATCAGGCACTACGTGTTCTGAAAATGGACTGTATTAATATGTGAATTCTGCTTCATATACAGTGAAGAGAGAATAACGTGGGATAAGTTGAATAAATGTGACATAGGGTTTCATCAATGCTTTTGTTTCCCTTAGACGTTTTGGTGGATTCCATGACATTGCTGTGGTGTGCGTTTACATGCGTGTGTTTTCAACTCCAGGGTAACATCTAGACAACATGCAGTTGTAAAGCAGAAAAATGAAAACCTATAAGAGACCCATTTCACTCTTCCAGCTAGTTTGAACACATAACAAGGAAGCTTAAAGTACCCTGTAGAGATGTGTTATCCTGGACACCATACCCCAACAATCAGATACAATTTGCAATAATGACACCCAAACAAAAGACACCGATTTGCACTGTGAATTTAGCTACCTGCCACAAGAAATGATACACTGGTCTAGTACAGCCTATATAACAGGACAATGCTAAAGCACCCCTCCATTGACTTGATAGTGAGGGTTGATTTTGACCATCAGTAATTGGGGGATTGGAATACTGTGACCTGCACAgtgaggaccccccccccccccccccccccccacacacacacacacacacaactctctgtGTAGTGCAATGCTGCTTAACTCTGAAATGTCATGGGACACCAATCAGTATCTATTCTTCTATGACAAAAGTGatttaaatgtgtttattttttgtAATCCAGAACATGTAATTATGTGTCTCTTGTGGAGTGCTTGGTTTGCTTGTGAAAGTCAACATATCCCAACACTGTTTCTCTCCATTACGTCCACAACTGTCACTTGGGCTTGATCCAGCTTCATGTTCTGTATCTTTTAATGTGAGGACAATTCTAGTTCGAAGTCTGTATCTGTGGAGCATTTGTTGGCATTCTGAAGTGCATGCTATAAAAAAAGACAACATGTCAAATTGTAAAACAGGATGACAACATATATCACGTTCCAAGCGATGTGTAAAATGAAATGCCATGTGAGAAAATCACATAAACATATTTAACTTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1508749 lncRNA downstream 12365 69318823 ~ 69320855 (-) True G1321796
TU1508732 lncRNA downstream 23778 69309113 ~ 69309442 (-) True G1321783
TU1508727 lncRNA downstream 27386 69305468 ~ 69305834 (-) True G1321778
TU1508689 lncRNA downstream 64765 69268051 ~ 69268455 (-) True G1321748
TU1508688 lncRNA downstream 65373 69267592 ~ 69267847 (-) True G1321747
TU1508954 lncRNA upstream 30923 69447983 ~ 69505735 (-) True G1321939
TU1508960 lncRNA upstream 40685 69457745 ~ 69490115 (-) True G1321943
TU1508999 lncRNA upstream 123987 69541047 ~ 69541587 (-) True G1321978
TU1509009 lncRNA upstream 134079 69551139 ~ 69551535 (-) True G1321988
TU1509015 lncRNA upstream 143756 69560816 ~ 69561143 (-) True G1321994
XM_036945110.1 mRNA downstream 95410 69233713 ~ 69237810 (-) True LOC110490620
XM_036945111.1 mRNA downstream 105516 69223071 ~ 69227704 (-) True LOC110490619
XM_036945108.1 mRNA downstream 131280 69184655 ~ 69201940 (-) False LOC110490615
XM_036945102.1 mRNA downstream 148720 69164155 ~ 69184500 (-) True smo
XM_036945098.1 mRNA downstream 169526 69149477 ~ 69163694 (-) False LOC110490790
XM_036945114.1 mRNA upstream 7780 69424840 ~ 69430808 (-) True LOC110499783
XM_036945122.1 mRNA upstream 85477 69502537 ~ 69513403 (-) True LOC110500968
XM_036945115.1 mRNA upstream 96843 69513903 ~ 69526098 (-) False LOC110511775
XM_036945116.1 mRNA upstream 96843 69513903 ~ 69526128 (-) True LOC110511775
XR_005036200.1 mRNA upstream 192685 69609745 ~ 69610345 (-) True LOC110499763
TU1508670 other downstream 110192 69220303 ~ 69223028 (-) True G1321729
TU1508651 other downstream 176221 69155526 ~ 69156999 (-) True LOC110490790
TU1508586 other downstream 259944 69031026 ~ 69073276 (-) False G1321652
TU1508038 other downstream 1156838 68072401 ~ 68176382 (-) True LOC110513021
TU1507110 other downstream 1535385 67793025 ~ 67797835 (-) True LOC118938833
TU1509018 other upstream 145250 69562310 ~ 69563040 (-) True G1321997
TU1509441 other upstream 481625 69898685 ~ 69899703 (-) True G1322348
TU1510302 other upstream 1119392 70536452 ~ 70537139 (-) True G1323036
TU1510280 other upstream 1126296 70543356 ~ 70545220 (-) True LOC110490645
TU1510499 other upstream 1608191 71025251 ~ 71039522 (-) True G1323207

Expression Profile