RNA id: TU1508896


Basic Information

Item Value
RNA id TU1508896
length 2337
lncRNA type sense_over
GC content 0.42
exon number 2
gene id LOC110490621
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 69333220 ~ 69417065 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaACTAAAGGGAAGACAGGTTAGAAACGGTGGGCCTGGGCCGTGGGACTTGTGCATGGGACTTGTGTGTCTGCATCGTGCCATTGGCCTCCACCTGGGGGACTGAACACACAACATAAAATGCACAACAGTGTTTTTCTGTTTTCTCTGCATGTGGGCTATGCTGGTTTGCTACTGTTTCATATGTTTTACTGTGATCTTATTTAACTGTCAATCGCTGTGTTGCCAAGCTGAAGTGTCTCTGATATTGTTTACTCACAGATAACTGCAAAGAGATTGTCTTTACTGGTTTCACGCAAGCAGAGAGCAGCATTCTTTAATTGCTGGGGGAAGGCACATCCCTGGTGGAAAGGTAACATTGTCATTCTGAATGGCATGTGAACTGCCTGCTGAACACTGTGCTGCTGATCCCTGGTGGTCACCTCTGGCTAATGGCCttttgttttagtgtgtgtgcaGAAGGGGGTAATTCAACAATTGTAGTCACGGAAATGACATCGGCACCCCCTCTGCATCATGACTCATGGCTTTATACACACATGCGTGCATGtgcactcatatacacacacaaacatttgacaggcgtgtgcacacacacacaccacattagacacacacacacacacacacacacacattagacacacacacacacacacacacatttctgtaTATTCTTTAAAAGACAGCAGGAATGACTTTGATGGTCCTATCAAACAGAGCTTTTGTTTTATTAATAGCAATGTAATTCATTATTGATGAGAGAATTTACTACTCACATAAATTGTTGCCGATGCTAACAGGTGTGTCGCACGACAGAGGACATTACCATTCAGCAATGTGCCTCACCCAATCCTTTGTCTATACTAGTAGCAGGAAGGTTGCTAAGCAACTGGCACATAGTCAGACGCATCTCACAGTTGCTGAACACACAAACTGTCTCCTAATTCAAACGAAAAGCTCACGACCAGCGCTTTCCATATTTCTATATTAAAATAATTATTGAATCACCCCCTCCTCCCATTGCAATACTGTTCATTGATTGAGTGTTTACGATCATGACTTCATAGAATGCCATCGATTTGTATATATTCATCATTACATATAAACTGTAAATGAGAAGCAAATATCTGAACACAAAAATAGCATGAATCTGCATGTGGTTATTCGTATAATGACTATAGATTATTATCATTAGAGAGACGCATTTCTGATATTTAGAGATGTGACCTGCTTTACATTCTGTTTAGCTGTTTACGTGTCCTATTGGAATGACAGCAGTCCTCAGCCAATCAGTGGACTAACAAGACCTATTGGTGTGTGGATCCTGTTGGATCACACAGCGTCACTCAAGGACGTGAACCAACCAGAACACTCACATCGGTGAAGGATTGTTGACTGACAAGCGTCAGGTCCAATGACGCTGCCTGGGAAAACAGGAACTGTCCAAGACTGAGGTCAATTGGAATTCTGGGAATAGATGGGACAGGGGAAGTTGTCTTTTTCCCAGATTCTCAATGTCATGGATATTGAGTGAAGCATAAAACTGtcacaagaagaagaaaaaggacCCTTCTTGGAAGACGAGGCCAGCTACTTTATCTAGATATTGTGTTTGTAAATAATAACATGATACAGCACATGGGTCAAGGAgctcctttctctctcatctgtcctctGGATTGCGAGCCAGGTACAAGGTCCTGCTTAGACCTCCAGATGAATCAGTCTCCGTGGTTTCCCTCCTCGTAATCAGTGTTATTATGATGCATCAGGCACTACGTGTTCTGAAAATGGACTGTATTAATATGTGAATTCTGCTTCATATACAGTGAAGAGAGAATAACGTGGGATAAGTTGAATAAATGTGACATAGGGTTTCATCAATGCTTTTGTTTCCCTTAGACGTTTTGGTGGATTCCATGACATTGCTGTGGTGTGCGTTTACATGCGTGTGTTTTCAACTCCAGGGTAACATCTAGACAACATGCAGTTGTAAAGCAGAAAAATGAAAACCTATAAGAGACCCATTTCACTCTTCCAGCTAGTTTGAACACATAACAAGGAAGCTTAAAGTACCCTGTAGAGATGTGTTATCCTGGACACCATACCCCAACAATCAGATACAATTTGCAATAATGACACCCAAACAAAAGACACCGATTTGCACTGTGAATTTAGCTACCTGCCACAAGAAATGATACACTGGTCTAGTACAGCCTATATAACAGGACAATGCTAAAGCACCCCTCCATTGACTTGATAGTGAGGGTTGATTTTGACCATCAGTAATTGGGGGATTGGAATACTGTGACCTGCACAgtgaggaccccccccc

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1508749 lncRNA downstream 12829 69318823 ~ 69320855 (-) True G1321796
TU1508732 lncRNA downstream 24242 69309113 ~ 69309442 (-) True G1321783
TU1508727 lncRNA downstream 27850 69305468 ~ 69305834 (-) True G1321778
TU1508689 lncRNA downstream 65229 69268051 ~ 69268455 (-) True G1321748
TU1508688 lncRNA downstream 65837 69267592 ~ 69267847 (-) True G1321747
TU1508954 lncRNA upstream 111942 69447983 ~ 69505735 (-) True G1321939
TU1508960 lncRNA upstream 121704 69457745 ~ 69490115 (-) True G1321943
TU1508999 lncRNA upstream 205006 69541047 ~ 69541587 (-) True G1321978
TU1509009 lncRNA upstream 215098 69551139 ~ 69551535 (-) True G1321988
TU1509015 lncRNA upstream 224775 69560816 ~ 69561143 (-) True G1321994
XM_036945110.1 mRNA downstream 95874 69233713 ~ 69237810 (-) True LOC110490620
XM_036945111.1 mRNA downstream 105980 69223071 ~ 69227704 (-) True LOC110490619
XM_036945108.1 mRNA downstream 131744 69184655 ~ 69201940 (-) False LOC110490615
XM_036945102.1 mRNA downstream 149184 69164155 ~ 69184500 (-) True smo
XM_036945098.1 mRNA downstream 169990 69149477 ~ 69163694 (-) False LOC110490790
XM_036945112.1 mRNA upstream 1661 69337702 ~ 69417065 (-) False LOC110490621
XM_036945114.1 mRNA upstream 88799 69424840 ~ 69430808 (-) True LOC110499783
XM_036945122.1 mRNA upstream 166496 69502537 ~ 69513403 (-) True LOC110500968
XM_036945115.1 mRNA upstream 177862 69513903 ~ 69526098 (-) False LOC110511775
XM_036945116.1 mRNA upstream 177862 69513903 ~ 69526128 (-) True LOC110511775
TU1508670 other downstream 110656 69220303 ~ 69223028 (-) True G1321729
TU1508651 other downstream 176685 69155526 ~ 69156999 (-) True LOC110490790
TU1508586 other downstream 260408 69031026 ~ 69073276 (-) False G1321652
TU1508038 other downstream 1157302 68072401 ~ 68176382 (-) True LOC110513021
TU1507110 other downstream 1535849 67793025 ~ 67797835 (-) True LOC118938833
TU1509018 other upstream 226269 69562310 ~ 69563040 (-) True G1321997
TU1509441 other upstream 562644 69898685 ~ 69899703 (-) True G1322348
TU1510302 other upstream 1200411 70536452 ~ 70537139 (-) True G1323036
TU1510280 other upstream 1207315 70543356 ~ 70545220 (-) True LOC110490645
TU1510499 other upstream 1689210 71025251 ~ 71039522 (-) True G1323207

Expression Profile