RNA id: XM_036945116.1


Basic Information

Item Value
RNA id XM_036945116.1
length 3367
RNA type mRNA
GC content 0.52
exon number 19
gene id LOC110511775
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 69513903 ~ 69526128 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCATTCTTGGGTGGTCACAATATTGCTCTGTGTGACGTTTCCCCTAGATACAGATATAGGATCAGATTCCCCTCCCCCCAATCCATATCTGTAACATTAGTTAAACATCATAATATATGATATTGTGCAAATAATTTGTGATCAAACCTGCACCAAGACAGTGGGCCCTATCAGATTGACCTGCACCTGTTGGTCATTATTAGTCGATGACGTCAGGTCAGTCGTTTGTTTTCGTCAACTCAATCACGCTTACCCATACCTGAGCGCAAAATAACAGCCGCAAGAAACATGACCTGTTTCGCGTTTCCATTTATATTGTTCATTCTTGTACCTCACACGATATCTCTCGGAAGCTGCAGTAGTTTTACTTTCTCCATATGTTGGAAAATCAGCAACAACTCCTTGTTTGGGAGTTGGCCAGAAGGACATTTATGGTTGAACACCACCAAATTGAAATCCATTTGGAGAGAGGACACATTTTCATCTTTGACAGTTGCCACTACTGTGGAACACAAATTGACACTTCATTATGGTGTCACGGTTCGGAAGTGGATATTCTCCATCTTCCCAGGTTCACATTCCATTGAGTTCAGAAGTATACATAAACCTGACCAACAGCCCATCAATAGCACTCTGGAAGCCCTGGAGTTGTTCTCCACCAATGAGGTGTTTGCGTGTGAAAACAGCACTCTGTACCTCTATCAGGACCCAAACTTCATCCTCATGCTCGGTCACACCGTGCGCTACCCTTTGAAGCTGGAGTCCAGGAGTACCTCCATGTTACTGGTGTCCTGGAAAGAGAAGATGCAGCCCCCGGCTGCCCCTGTCCCCGTCCACTCTGTGTCCCTATACCACTCTGAGATGAAGGCCTACGCTGCCCTTAGTGTGGACAGTACCCACTCCAACCACTACCGCTTCACAGCCCTGGAATCCTGCAGTTCCTATGCTGCCTGTGTGGGGGTGGCAGGCAGCCACTCGCTTACCTGTCTCTCCACTATCACAGACCCAGAAGTCCCCAGACATTTCCAGGTGACGACGTGGAACAGCAGCAGTGTCACAGTGTCCTGGGACTGTCCTGACAACCGCAAGTTCTCCTTCTTCCTTGTCACGGTCCTCTACCTCAATGGCACCAACCATGTATTGGAGGAGAGGTCATTCAGGCACACACTGGACACCTTTGTGTTCTCTCAATCTGACCTGCCGCCCTGTAGCAGGGTGAAGTTTGGCCTGCAGACGGTGTGCCAGGCAGGCACGGAGGCTCGCCACAGCAGAATGGTCCTCATCAAAGGGAATACTGTCCACTCAGAAATTGAGAACCTGTGGCAGACCTCCTCGGGGCCGGACAACTACACCCTGAGCTGGGTGGTGAGGAACACTTCTTCTATCTCCATGTTCAGGATCTACCACCAGGGGGTGCTCCACTACACCACCCTGCTCACCAGCCACACGGTGGCCAGCCTTCTGCCGTGCAGCCAGTACTTGGCTAGAGTAGAGGCGCTGTGTGGAGACAGCGTGGTCATGAGCTCCAAGACCGTACTCGCTCGCACAGGACCCAGAGGTGTTTCAGAACTGCGCTACCGTCCTGAGGACTCTACAGCGCTGTGGATTGGTGGGACCGGACAGGGCCTGGCCTTTCAGTACCAGCTGTCTTATGACAATGGCTCGACCATCCAGCAAGGCCGGCTGATGGAGCCTTTGCTCCCCCTCCTGGGGCTCATTGAGGGTGCGCGCTATGCCCTGGACGTGTGGGAAGAGTGTGACGGCGAGTGGAGCGCTGACCCGGCCCTGGTGTGTTTCGATGGAGTCAACGTTTCCGTCAACGCCCTCGTGCTGCCGGTGGCGTCCACCCTGAGGCCGAATGAAGACAAAGTTCTAGCCTTTATTGTGCCTTGGTTAATGGTGTTGGACCCAAAGACTGAGCCCTGGGCTGAGCTGAAGCGCATCTACGAAAAACTACTGGAGGAGCTTTTGAAAGAGTACCCAATTAAGACCCGGGTGGAGTTGGTTGCGTTCAAGGAGCTGGAAGGCGAATCCAAAACTAAGATTACCTTTCAAGGCTTTGACGCTTCCATAACCGACGTAGACTTACCGCTACCACCTGGCGAGCAGCTGGACCATATCCAGTCCCTCCAGCCGCCCAATATCACAGTCAAGGACGGGATCATCTACTGGGATGACCCAGATGAGTGTGCGACGCCTGACCTGAACAGGTGTGATGCCAACTCTTTGTGCGTCAACACTCTGAACTCCTATACCTGTGTGTGTCAACATGGCTTCTATGACGTCGGGCCCGCCTTCGTTCCCCCTCCTACCCCTGCCtcacatcctgtctgttatgAAAAAGGGATGTTCACCCAGTGCCTGACGAGATCGATGGCCGGAGGTATCGCCAAAGCCTTCCTGATTGGCTACTTTGGTGGTGACGTGACGGTTGTCTTGAATGAAGGCCGTTGTACCATGGAGGAGAGCGAGACACTCTACCACTTCCACGTGTTGCGTAAACCCTCGCAGTGTGGAACGATACGGCTGgtgaacAGAACACACATCGAGTTCCGGAATACTCTGACAGTGACCTTGAGCAGAGAGAGGACCATCACACGAAGAGATCTCAAGGTTATCTGGAAGTGCATCTACCCCCGGAACTATGTCCGCAACACCCAGATAAACGTAGATCTGGAGTGgATCACCTCCCACTCTGTGGTGGAGTACAACTCCTCCCATCAGCTGGGGCTGGCCATGACCATGTACAGCGACAACTCCTTCTCCTACGGCTACAGAGACTCCATCGCCCTCCACCTCAGCGACGTACTCTTCTTCGAGGTGGCCCTCCTGACAAACAACACGTTCGCCTCGGAGGTCCTGCTAGAAGTGATTTCCTGCTGGGCCACAGAGAGCCCGGATCCACAAGACGAAACCAAGGGCTTCTTTCTCCTAGATGGCTGCCCTGTTGACAGCACCTTTCATTGGCTGTCTGTGAACGGTGTGTCACAGAGGAGCAGATTCTCCATTCACATGTTCACTATGCCCAAGGAGTTACCCATCTACATGCACTGCCTGGCCCGGATATGCAGTCACGATGAGGACTGTACTACGAACTGTACCACCCACAGACTTTCAAAGAGATCAACAGCTAGATGGGATCCATACATCAATGTAGCTGTGGTCGTGTCTGCAGGACCACTGATGGTCACCCCCGAGGCGGCACCAGGGACCAAACTCTCCAACTGGGATGAGGCTTTGACAATGATCTACGTCGTGGGAGGAACCATGGGTGTCTTGATGTTGACGATGCTTGGTGTGAGCGCAACAAAGGCTATAATGAATTATTATGAGAGAGCAAGGCCTCAATAAAAACATGGaaccaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1508954 lncRNA downstream 8168 69447983 ~ 69505735 (-) True G1321939
TU1508960 lncRNA downstream 23788 69457745 ~ 69490115 (-) True G1321943
TU1508894 lncRNA downstream 177862 69333684 ~ 69336041 (-) False LOC110490621
TU1508896 lncRNA downstream 177862 69333684 ~ 69336041 (-) True LOC110490621
TU1508749 lncRNA downstream 193048 69318823 ~ 69320855 (-) True G1321796
TU1508999 lncRNA upstream 14919 69541047 ~ 69541587 (-) True G1321978
TU1509009 lncRNA upstream 25011 69551139 ~ 69551535 (-) True G1321988
TU1509015 lncRNA upstream 34688 69560816 ~ 69561143 (-) True G1321994
TU1509016 lncRNA upstream 35526 69561654 ~ 69562017 (-) True G1321995
TU1509261 lncRNA upstream 38229 69564357 ~ 69564706 (-) True G1322201
XM_036945122.1 mRNA downstream 500 69502537 ~ 69513403 (-) True LOC110500968
XM_036945114.1 mRNA downstream 83095 69424840 ~ 69430808 (-) True LOC110499783
XM_036945112.1 mRNA downstream 96838 69337702 ~ 69417065 (-) False LOC110490621
XM_036945113.1 mRNA downstream 96843 69333220 ~ 69417060 (-) False LOC110490621
XM_036945110.1 mRNA downstream 276093 69233713 ~ 69237810 (-) True LOC110490620
XR_005036200.1 mRNA upstream 83617 69609745 ~ 69610345 (-) True LOC110499763
XM_036945124.1 mRNA upstream 85495 69611623 ~ 69614219 (-) True LOC118936535
XM_036945125.1 mRNA upstream 92840 69618968 ~ 69640826 (-) False LOC110499760
XM_036945127.1 mRNA upstream 92840 69618968 ~ 69640826 (-) False LOC110499760
XM_036945129.1 mRNA upstream 92840 69618968 ~ 69640826 (-) False LOC110499760
TU1508670 other downstream 290875 69220303 ~ 69223028 (-) True G1321729
TU1508651 other downstream 356904 69155526 ~ 69156999 (-) True LOC110490790
TU1508586 other downstream 440627 69031026 ~ 69073276 (-) False G1321652
TU1508038 other downstream 1337521 68072401 ~ 68176382 (-) True LOC110513021
TU1507110 other downstream 1716068 67793025 ~ 67797835 (-) True LOC118938833
TU1509018 other upstream 36182 69562310 ~ 69563040 (-) True G1321997
TU1509441 other upstream 372557 69898685 ~ 69899703 (-) True G1322348
TU1510302 other upstream 1010324 70536452 ~ 70537139 (-) True G1323036
TU1510280 other upstream 1017228 70543356 ~ 70545220 (-) True LOC110490645
TU1510499 other upstream 1499123 71025251 ~ 71039522 (-) True G1323207

Expression Profile