RNA id: XM_036945124.1


Basic Information

Item Value
RNA id XM_036945124.1
length 1869
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC118936535
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 69611623 ~ 69614219 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACTGTGCGTATCAGTCACACCAGCGACCGCTGCCGACGGACTAGTATCAAATACCCTGCACACACATCCACGAGTTCCACAGCACATAGTAACCCACTCACTGCAGTGACCATTTCAGCATCCGATGCCTTTACCTCTACGGGCAAGGAGAAGAAGAAGTGTTTGCATTTGCTGAGAAAATTGGGGCGTTTTCTCAAGATGCTGGAGAACGGCGGCAAGGTGCTGAAAGAGGGGCTTCTGGAGAAGCGAAGCGACGGTTTGCTGCAGCTGTGGAAGAAGAAGCACTGCGTCCTCACGGAGGACGGGGTTCTGCTTCACCCGCCGAAGCAGCACGACCACCCGCACCATTACAACCACCACGGCGGCGGAGACACTGGCAAAGTCAAGGAGCTGCACTTCTCCAACATGAAAACTGTGGACTGCGTCGAGAGGAAAGGGAAATACATCTACTTCACCGTGGTCATGTCGGAGGGCAAGGAGATCGATTTCAGGTGTCCACAGGACGAGGGCTGGAACGCCGAGATAACTTTGCAGATGGTGCAATACAAAAACAGGCAGGCCATCCTGGCGGTGAAGTCTACCAGACAGAAACAGCAGCTCCTCGTTGTTCAGCTCCCAGGACAGAAAATTATTCGGAGCTCTCCAAACGTTGCGTGACCTGCGCCTCGGACATTCGACGTGCGGTTAATTGGACATTCAGAGGAGGGATCGATGGACTCCTGCTGCATCTGCCCGGCCTCACAAAAGGAGCGTCACACCCCGCAGAAAACATCTCATAATTTAACTGTTGTTTGGTCCCGACAACAGCAGCAGTCTTTTCTCAGTCCTATTTTTCATTAGAGACTCTTTATTTGAGACAGATGGACACTGATGGACAAAGCTTAGGCCTCTGCTACAGCACGAGTGAAAACAGCTGTATTCTAACGGGCGATTCTCTGCCACCCCCTTCTTATTTATTAGATtgtgtatatatgtttttatCTTAACAGTGTCATTGCCTAATGTACAGTGTGGTTGTTGCTGGAGTTGAAACTGAAAGCTGTGCTTGGAGATTCCGTAGGACAGTGTAATGTTTTGTCATGATTGGACATAAGCCTCAGTATCGTTGTGATCCTGGTGGGATGGTTGATTGTGTTACACCTTTAAGGATGTACCAGAgtcccttcctttcccttctaCTATTTCTAGAGGTGTGAGTAGCACATCCTATTGTAAATCTGTGGCCATGATACACATCCTCATTCTTTTATTGAACCAAAGACTTATACGGTATAGTTGCATTTTCCTCCCAAGTGTAGTTGACTGTAAAAATGGCAGGATGCTTCAATGATGAAGGAGATGTTGACAAATCTTTTATTTGTTTGATTTCTCCATAAATCTCACGTTTTGTGATTATCATCGTGCCAGATATTGGCACCCTTTTGCATTACAACTATGGAATATGGTTTGACTTTAGGAAGCAACGTGTGTCAACGCTGCATATTCTTTTGGGAGTCTTAAATCTGTACGGATCAGAAACTGCAGTCCTTTTCAGTGGGAACTGATAGAAAGGTATCCTAGTGAGCAAAACTGGTTGAACATTTCCTTTCAATGGCAAAAGTGTCCAAAAGGACTTATTTTCAACCAGTTTTGCCAAGAGCAAGTCATTAGGCAAATAATTCATCACCATCTTTCCTGAGGAAGCTATGCTGAGACTGACTGTTGAGTTGCCCCCTCACACCACCCCTGGTGTGTCAGGGTTGTCCTCACGTTAACACATGGGTcctttttttaaaaaaaagttactgTTATTCAGTTGGGGTTTTATTTTGATGTGAGAGCTATTTTCATACTTCTGAAATATACATTCCATTTCAAATGAACAGCA

Function

GO: NA

KEGG:

id description
K23793 PHLDA; pleckstrin homology-like domain family A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1509273 lncRNA downstream 3525 69607345 ~ 69608098 (-) True G1322213
TU1509272 lncRNA downstream 6867 69604452 ~ 69604756 (-) True G1322212
TU1509271 lncRNA downstream 8399 69602957 ~ 69603224 (-) True G1322211
TU1509266 lncRNA downstream 38367 69572489 ~ 69573256 (-) True G1322206
TU1509261 lncRNA downstream 46917 69564357 ~ 69564706 (-) True G1322201
TU1509310 lncRNA upstream 30996 69645215 ~ 69645423 (-) True G1322237
TU1509325 lncRNA upstream 47080 69661299 ~ 69661523 (-) True G1322252
TU1509341 lncRNA upstream 94495 69708714 ~ 69710973 (-) True G1322267
TU1509368 lncRNA upstream 175437 69789656 ~ 69790298 (-) True G1322286
TU1509372 lncRNA upstream 184070 69798289 ~ 69799504 (-) True G1322290
XR_005036200.1 mRNA downstream 1278 69609745 ~ 69610345 (-) True LOC110499763
XM_036945116.1 mRNA downstream 85495 69513903 ~ 69526128 (-) True LOC110511775
XM_036945115.1 mRNA downstream 85525 69513903 ~ 69526098 (-) False LOC110511775
XM_036945122.1 mRNA downstream 98220 69502537 ~ 69513403 (-) True LOC110500968
XM_036945114.1 mRNA downstream 180815 69424840 ~ 69430808 (-) True LOC110499783
XM_036945125.1 mRNA upstream 4749 69618968 ~ 69640826 (-) False LOC110499760
XM_036945127.1 mRNA upstream 4749 69618968 ~ 69640826 (-) False LOC110499760
XM_036945129.1 mRNA upstream 4749 69618968 ~ 69640826 (-) False LOC110499760
XM_036945126.1 mRNA upstream 4749 69618968 ~ 69640830 (-) False LOC110499760
XM_036945128.1 mRNA upstream 4749 69618968 ~ 69640830 (-) True LOC110499760
TU1509018 other downstream 48583 69562310 ~ 69563040 (-) True G1321997
TU1508670 other downstream 388595 69220303 ~ 69223028 (-) True G1321729
TU1508651 other downstream 454624 69155526 ~ 69156999 (-) True LOC110490790
TU1508586 other downstream 538347 69031026 ~ 69073276 (-) False G1321652
TU1508038 other downstream 1435241 68072401 ~ 68176382 (-) True LOC110513021
TU1509441 other upstream 284466 69898685 ~ 69899703 (-) True G1322348
TU1510302 other upstream 922233 70536452 ~ 70537139 (-) True G1323036
TU1510280 other upstream 929137 70543356 ~ 70545220 (-) True LOC110490645
TU1510499 other upstream 1411032 71025251 ~ 71039522 (-) True G1323207
TU1510608 other upstream 1588281 71202500 ~ 71237846 (-) False G1323296

Expression Profile