RNA id: XM_036945128.1


Basic Information

Item Value
RNA id XM_036945128.1
length 3061
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC110499760
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 69618968 ~ 69640830 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGATGTATATGAGCGCAAGCGGCGGGATGGTTCTCTCTTTTACCGCCATAAGAGCGGAGTCTTTTGCTTTGCGACCGCTTCACTGCGTAGATCCACCTAGTCAAGCCGCCAGCTAAAGCAGCATCACTCGAGACTTGGCTAAGATGGCAGACATGGACAAtaagGACCAGGCTGAGCTGGACCCGGCAGATTTGGAGGACGTGGAGGacgtggaagaggaggagactggAGAGGACGTCAACAGCAAAGCTCGTCAGCTCACCGTGCAGATGATGCAGAACCCACAGATTCTGGCCGCGTTGCAGGAGAGGCTGGACGGCCTGGTGGGCTCGCCGTCAGGATACATGGAGAGCTTACCGAAGGTAGTGAAGAGACGGGTCAACGCCCTAAAGAACCTACAAGTGAAATGCGCCCACATTGAGGCCAAGTTCTACGAAGAGGTCCATGAACTGGAGAGAAAGTACGCCGCTCTCTACCAACCCCTCTTCGACAAGcgaAGTGACATAGTTAAAGCAGCCTATGAGCCCACAGAGGAGGAGTGTGAGTGGAAGGCTGATGAGGAGGAAGAGTTGACAGAGGAGATGAAGGAGAAGGCCaaggtggaagaggagaagaaggatgaggagaaggaggaccCCAAAGGTGTTCCCGAGTTCTGGCTAACGGTTTTCAAGAACGTCGACCTGCTTAGCGACATGCTGCAGGAACATGATGAACCCATCCTCAAGCACTTACAAGATATCAAAGTCAAATTCTCGGACCCTGGCCAGCCCATGAGCTTTTCTTTAGAATTCAACTTTGAGCCCAATGAGTTCTTCACAAACACTTTGTTGACAAAAACCTACAAGATGAGGTCTGAGCCTGATGAGAACGACCCCTTCTCCTTCGACGGGCCTGAGATCATGGGCTGCACAGGTTGTACGATCGACTGGACGAAAGGCAAGAACATCACCCTGAAGACCATCAAGAAGAAGCAGAAGCACAAGGGGCGTGGCACAGTCAGGACGGTCACCAAGACAGTCCCCAACGACTCCTTCTTCAACTTCTTCACCCCGCCTGATGTCCCTGAAAGTGGAGATCTGGATGAGGACTCTGAGGCTGTCCTCGCCGCTGACTTTGAGATCGGCCACTTCATCCGCGAGCGTATCGTCCCCAGGGCTGTGCTGTACTTCACGGGGGAGGCCATCgaggatgacgatgatgatTacgatgaggagggagaggaggctgatgACGAGgagggtgaggaggagggagaggaggagaatgacCCTGACTATGACCCCAAGAAAGACGCAAATCCCCCAGCCGAGTGCAAGCAGCAGTGAAGGCTGTGGCTTTGAGGATCAACTGCACTGTAACAGCTTCTCAAATAAAACACTTACTTACGCCTtataatgttttgtatttttcttggtagaaataaaaaaataaataaagggtTTCAAGATTTTTGTTACAAAAACCTCCTAATATAATGTGAGCAGTGGCTCGATATGCATAGTATTTTACTAGACCCCCACCCCCCTGTACAAATAGTTAGAATGCCACAAACTCCCTGAAAGCATGATCTTGTTTCTCTCACTGCTAAACTAGTTTGGGTTCTTGTGAAGTTTTTTGTTGTATTGCTCTTGGACAACAGCTGTGGTTAGACTGCATTGAGGCAGGTGATGAGAAAGCTAACCTATTCCTTTTCCCTCGCGCTACCAAAGTTACCGGTCAGTTCAGGTTGTGAGTTGGAGTTCTTTTGTCATTGTATTAGTGGGCCTCGAGCACGGTCAGAGCAAAACCCTGCATTTAGTCATGGCTAATGAAAAACTTTGAATCGCTGTGCACATTTGGCCACTCAAGCATGCCATTTAGAGCAGGGAAAGTGGTTATTGGCCACTTGTTTGGGCTGAATCAAGTTGTCATTCTAAAACATTCCAGTTTGCAGACTGACAGGCATTGGACGTTTGAATGCTCTCTTGGGATGAATATTACCTCGACTACGTGGTCTGATTTGTTAAAGAAACAGAACCATGTGTTAGCTGCTAAATTTAATGAGCCGAGTCTGCAACTTATTGGTTTCTATTAAATACTTACTGTTCTTTCTGAATTTAAATTTGTGTTAAGGGAGTGTTTTTCCTCCAGCACGCATCTTGGTCTTGTCCAGTCACTCCTTAACATTCCAGATGATTTGACGAGGGACAGTTCCACGGTTTCGCCAGCAGGGGGCACCCCATGCCCAATCTGCTTCAGGCTCTTGTTAGGCCTACAGTTTACTTGTCTTTTTCTATAGCACTTTGTACTACTTAGTCATGTATCAGTGGTGTCCTCTATGGTTGGCTGTCGGTCCAGTAGCCCGTGTGCAAATCAAAGTGAGCAGTACTTTGGAGGTGGCCGTTGTCATACTGCGCCCTGACGATGCCCTGTGGGCTTTCTCCTGCGCCATGAAACATTTCCCTGTAATACATGATTCTCCCAAGTGCATTACTCTTTCATTTGGGAATCCCACTTGACTTGTGTACTCTGATAGCAATAGGTTCGCAACGGGTTCCCTTCCGAGGACGAAAACGACCAAATTCAGGCTTATGTTGGCATGTGGTTGTGGCTTTTGAGCCTTGTAACTCTCGAGGTTAAGCTCGTGCCTGTCTGGTCCCTGAGCATACGGCTAATTTATCACTGTGAAGGAAAGGTGGCAATGAGTTCTGGTAGAAGTCCTGTCTGTTGACCGCCCTCTGTAGCCAACCCCACCCAGCAGGTCACACTGAAGCATGTAAGAGCAATACTTAGTCAGGGAATGGAAATAAAAGGAAGTAGCTTAAGCCCACCCACCTTTTCCTTTAGTGGAAACAGTCATGTCGGTGTATGTTGGGTGGTGGCGCCCTCGCTGCTGCCGCTAGTGGAGCTCTAGGGAGTACTGCTGCAGTCAGGAGATTACGTCTGGACTGTTCTAGGGACGACTGGATTCTGTCTGTGACTCCTTGAGCAGCTGTTGTCAAAGCTAAATGCTATGCTACAAATACTAAATGTACTCAATAACTGTATGTATATTCATGAATAAATTGGTTAAACGTG

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K11279 NAP1L1, NRP; nucleosome assembly protein 1-like 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1509273 lncRNA downstream 10870 69607345 ~ 69608098 (-) True G1322213
TU1509272 lncRNA downstream 14212 69604452 ~ 69604756 (-) True G1322212
TU1509271 lncRNA downstream 15744 69602957 ~ 69603224 (-) True G1322211
TU1509266 lncRNA downstream 45712 69572489 ~ 69573256 (-) True G1322206
TU1509261 lncRNA downstream 54262 69564357 ~ 69564706 (-) True G1322201
TU1509310 lncRNA upstream 4385 69645215 ~ 69645423 (-) True G1322237
TU1509325 lncRNA upstream 20469 69661299 ~ 69661523 (-) True G1322252
TU1509341 lncRNA upstream 67884 69708714 ~ 69710973 (-) True G1322267
TU1509368 lncRNA upstream 148826 69789656 ~ 69790298 (-) True G1322286
TU1509372 lncRNA upstream 157459 69798289 ~ 69799504 (-) True G1322290
XM_036945124.1 mRNA downstream 4749 69611623 ~ 69614219 (-) True LOC118936535
XR_005036200.1 mRNA downstream 8623 69609745 ~ 69610345 (-) True LOC110499763
XM_036945116.1 mRNA downstream 92840 69513903 ~ 69526128 (-) True LOC110511775
XM_036945115.1 mRNA downstream 92870 69513903 ~ 69526098 (-) False LOC110511775
XM_036945122.1 mRNA downstream 105565 69502537 ~ 69513403 (-) True LOC110500968
XM_036945134.1 mRNA upstream 37348 69678178 ~ 69731588 (-) False LOC110500965
XM_036945135.1 mRNA upstream 37348 69678178 ~ 69731588 (-) False LOC110500965
XM_036945133.1 mRNA upstream 37348 69678178 ~ 69782508 (-) False LOC110500965
XM_036945130.1 mRNA upstream 37348 69678178 ~ 69782541 (-) False LOC110500965
XM_036945131.1 mRNA upstream 37348 69678178 ~ 69829767 (-) False LOC110500965
TU1509018 other downstream 55928 69562310 ~ 69563040 (-) True G1321997
TU1508670 other downstream 395940 69220303 ~ 69223028 (-) True G1321729
TU1508651 other downstream 461969 69155526 ~ 69156999 (-) True LOC110490790
TU1508586 other downstream 545692 69031026 ~ 69073276 (-) False G1321652
TU1508038 other downstream 1442586 68072401 ~ 68176382 (-) True LOC110513021
TU1509441 other upstream 257855 69898685 ~ 69899703 (-) True G1322348
TU1510302 other upstream 895622 70536452 ~ 70537139 (-) True G1323036
TU1510280 other upstream 902526 70543356 ~ 70545220 (-) True LOC110490645
TU1510499 other upstream 1384421 71025251 ~ 71039522 (-) True G1323207
TU1510608 other upstream 1561670 71202500 ~ 71237846 (-) False G1323296

Expression Profile