RNA id: XM_036945134.1


Basic Information

Item Value
RNA id XM_036945134.1
length 3615
RNA type mRNA
GC content 0.54
exon number 21
gene id LOC110500965
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 69678178 ~ 69829767 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGCTGTGCTtgctgtgtcctgtgtgtgtgtctggctgcgGGCGATCAGATCTGAGCATTTCGCGGTCAGTGGCTTCGCCCTGCTTGGCCCCTGCTGATCCCCAGCAGGCCCTCCTCAGGCCCCCCCGGGCTCTCGCCGGCCCCATGATGAAGGAGGAGGGAGCGCTGTGCCGTCGCCGCTTCTCAACATGCGGCACGACCAGCTCGCCGCGGCCCCCACACCCCGACGGACGCAAGCTCATCCGCAACGCTTCTTTCGGGGGCTACAACGAGCTGTCGCCCCTCTCTCTGCCAGgTTTCGACCGGGGGAAAGAAGATTCCCTGCCTCCGAAAGAGGACTCGTCTCACTCCATATCCAAGAGCAAGTCAGAGTCCAAGCTCTACAATGGCTCTGACAAGGATGTCTCGTCGTCCGGTAACAAGCTCACCAAGAAGGAGTCGCTCAAGGTACAGAAGAAGAACTACcgtgaggagaagaagagagccaCCAAGGAGCTCCTCAGCACCATCACAGACCCCTCTGTTATTGTCATGGCTGACTGGCTCAAGATCCGGGGTACTCTGAAGAGCTGGACCAAGCTGTGGTGTGTGCTGAAGCCGGGGGTTCTTCTCATCTACAAGACCCATAAGAACGGCCAGTGGGTGGGCACGGTGCTGCTCAACGCCTGCGAGCTCATCGAGAGACCCTCAAAGAAGGACGGCTTCTGTTTCAAACTCTTCCACCCGCTGGAGCAGTCCATCTGGGCAGTCAAGGGTCCTAAAGGAGAGGCGGTGGGTTCCATCACACAGCCATTACCTGGCAGCCACCTCATCTTCCGTGCCACCTCTGAGTCAGACGGCCGTTGTTGGATGGATGCTCTGGAGCTGGCTCTGAAGTGCTCCGGCCTCCTGAAGCGGACCATGATCCGCGAGGGCAAGGAGGAGCTGGCCAGCACGGCCGGGGAGAGCTCCCAAATTAACTTCTACAGCCTGCTGAGAGCCCACAACATGCAGGGTTTCCAGTTCAACGACAGTGACCAGTTCAAGGACCCTGACCTGTACTCAGACAAGTCGGACCGGGAGGGGGAGCAGGACCACGAGGAGTCAGACGTGGAGGGTCTGGGGAAGAGCGAGGAGAGTGACAGTGACACGTCGGAACGTCAGGATGACTCCTACATTGACCTTGACCCCAACGAGGCCCTGCGGGAGACTCCGTACCTGGAACAGTCCCACGAGGAGCTGGGAGAGGCTGGTGAGGCCTCCCAGACAGAGACGGTGTCGGAGGAGAATAAGTCTCTGATCTGGACGCTGCTGAAGCAGGTCAGGCCTGGGATGGACCTGTCTAAAGTGGTCCTGCCCACCTTCATCCTGGAGCCACGCTCCTTCCTGGACAAGCTGTCCGACTACTACTACCATGCTGACTTCCTCTCTGAGGCAGCTGTGGAGGAGAATGCCTACAACAGGATGAAGAAAGTAGTGAAGTGGTATATCTCTGGATTCTACAAAAAGCCACAGGGCCTGAAGAAGCCATATAACCCCATCATCGGTGAGACCTACCGCTGCATGTGGCTCCATAGCAAGACCAACAGCAAGACATTCTACATTTCTGAACAGGTGTCCCATCATCCTCCAGTGTCAGCGTTCTACGTCAGTAACAGGAAGGACGGCTTCTGTCTCAGCGGAAGCATCCTGGCCAAGTCCAAGTTCTACGGAAACTCCTTGTCGGCCATATTGGACGGAGAGGCTCGGCTCACCTTTCTCAACAGAGGAGAAGACTACGTCATGAACATGCCCTACGCCCACTGCAAAGgcATCCTGTATGGCACCATGACTCTGGAGCTGGCTGGCCAGATCACCATTGCCTGTGAGAAGACAGGATACAGTGCCCAGCTCGAGTTCAAACTCAAGcCGTTCTTGGGTAACAATGACAGTGTGAACCAGGTCTCTGGAAAGATCAAGCTGGGGAAGGAGGTGCTGGCTACGCTGGAGGGACACTGGGACAGTGAAATCTTCATCAACGATAAGAAGACCGGGGTGGTGGATACGTTTTGGAACCCCACTGCAGAGCTGCGTCAGAGCAGGCTGACACGCTGCACCGTGCCTCCTGAGGACCAGGGAGACTATGAGTCTGAGAGGTTATGGCAGCATGTAACGAGGGCCATCAACAACAAGGACCAGACAGAGGCCACCAATGAGAAGTTTATCCTGGAGGAGGCTCAGAGGAAGTCAACCCGCGAGCGCAAGGCCAAGTGTGAGGACTGGGCGCCCGGGCTCTTTGAACAGGACCCCGTCACCGGAGAGTGGCATTACAGATATGCCGAcaCCCGGCCGTGGGATCCGCTGAATGATATGATTCAGTTTGAGAAAGACGGCTGGATCCAGACTAAAGTGCGGCACCGCACCCCTATGGTACGTTCTGCCAGTGTAATTAGTCTCAGTAACCAGGGCCCCAGGAGGGATGGCAATTGCAAGTGCCAGGTGACAGGGCCCAAAAGAAAGCACAAGCACAGTGACAAGCCCAAGAAACCTGAGAGTGGCTGCTCCTCCCCAGAACCTGACCGCCAGGACTCCTCCGGCAGCGAGCGACACAAAAGCAAGCACAGTAGCCGGTTAAGGAAAAAGGGCCCAGACCTTAGTGAACTTCAAAGTGCCATTGATTCTATAAAGAAGACACAGGAGAACATTTACAAGAGCATCGGTGTGCTGCGCTCCCGAACGACAGTGGGCCAGGCGGCAGCAGAGGGCGGATTCCTGCAGCAGCGCGACTAcgccatcatcatcctcctcatcctccttcaggtCTTCATCAACTTCCTGTTCAAGTAGCAGccgacagactgacagagagagagacagatggagttagagagagagaccgatggagagagagagacaggactgatGGGGGGGGGTTGTCCAGGTTAAGGAGGAGAAACAGTCTGGAAGTGAATGAACTTCAAGAGCACCCAGTAGCTCtgcctcaaccctctctctctctctctctactgagtTGACCCTGCTCCACTGTCCTCAGACGGGCCACCATTGTCACACACACGTCTCCAAAGCAAGCATTCCTGAAAGAGGCTCctcaaaaaaaactgaaattgtTTTTAATTTCTATTTATTTGTACCTGTTTAAAGATCGGTGTATTTTTAAAGGGGGAGTGGCACCGGCCAGGACTGAAGGGAAGTTGAGGTCAGCGTTCGGCCTTAGCCGGCGTCATGATGTCGTGAACTGGGCCTTGGAGAAGGGATTGACATCTGGCGGCCATTTTTAATTTTGCTAACGGACACCGCTCCTTGCATTTCACCCGCCTCCCCAACGACAGGGAACATTTTACACTGAGACTTTTGAAGAAAAGTTACTttcattcaatatttttttttaaagactgttCATTTGTTTCGTTTGTTTGGTGTGTCCTTTGTGAGTAGAACCTCTAGTTCAAAAATATACGAGAAGGGAGAAGAACAGATTTAAGCGGTCCAATATATGCTTTGACAAGGCTCGAGTTTCCTAGCTTGACGGGGAATCGACAAACAAAAGAAGGTCATTGTAATCAATCGATTTGAATCGTTCCACTCAAATTTGTAGACCAGGTCAATTGTATAAACTAGATGCTTGACATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1509325 lncRNA downstream 16655 69661299 ~ 69661523 (-) True G1322252
TU1509310 lncRNA downstream 32755 69645215 ~ 69645423 (-) True G1322237
TU1509273 lncRNA downstream 70080 69607345 ~ 69608098 (-) True G1322213
TU1509272 lncRNA downstream 73422 69604452 ~ 69604756 (-) True G1322212
TU1509271 lncRNA downstream 74954 69602957 ~ 69603224 (-) True G1322211
TU1509368 lncRNA upstream 58068 69789656 ~ 69790298 (-) True G1322286
TU1509372 lncRNA upstream 66701 69798289 ~ 69799504 (-) True G1322290
TU1509375 lncRNA upstream 72903 69804491 ~ 69805095 (-) True G1322292
TU1509421 lncRNA upstream 140440 69872028 ~ 69875892 (-) True G1322334
TU1509432 lncRNA upstream 147927 69879515 ~ 69880558 (-) True G1322340
XM_036945126.1 mRNA downstream 37348 69618968 ~ 69640830 (-) False LOC110499760
XM_036945128.1 mRNA downstream 37348 69618968 ~ 69640830 (-) True LOC110499760
XM_036945125.1 mRNA downstream 37352 69618968 ~ 69640826 (-) False LOC110499760
XM_036945127.1 mRNA downstream 37352 69618968 ~ 69640826 (-) False LOC110499760
XM_036945129.1 mRNA downstream 37352 69618968 ~ 69640826 (-) False LOC110499760
XM_036945144.1 mRNA upstream 149636 69881224 ~ 69890642 (-) False LOC110499751
XM_036945142.1 mRNA upstream 149636 69881224 ~ 69891077 (-) False LOC110499751
XM_036945143.1 mRNA upstream 149636 69881224 ~ 69891087 (-) False LOC110499751
XM_036945145.1 mRNA upstream 149639 69881227 ~ 69891071 (-) True LOC110499751
XM_036945146.1 mRNA upstream 173833 69905421 ~ 69927630 (-) False LOC110499754
TU1509018 other downstream 115138 69562310 ~ 69563040 (-) True G1321997
TU1508670 other downstream 455150 69220303 ~ 69223028 (-) True G1321729
TU1508651 other downstream 521179 69155526 ~ 69156999 (-) True LOC110490790
TU1508586 other downstream 604902 69031026 ~ 69073276 (-) False G1321652
TU1508038 other downstream 1501796 68072401 ~ 68176382 (-) True LOC110513021
TU1509441 other upstream 167097 69898685 ~ 69899703 (-) True G1322348
TU1510302 other upstream 804864 70536452 ~ 70537139 (-) True G1323036
TU1510280 other upstream 811768 70543356 ~ 70545220 (-) True LOC110490645
TU1510499 other upstream 1293663 71025251 ~ 71039522 (-) True G1323207
TU1510608 other upstream 1470912 71202500 ~ 71237846 (-) False G1323296

Expression Profile