RNA id: TCONS_00044980


Basic Information

Item Value
RNA id TCONS_00044980
length 990
lncRNA type read_through
GC content 0.39
exon number 4
gene id XLOC_022247
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 17657994 ~ 17839198 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAACGGCTGAGGATGGTGTCCgagaaaaaaacattcaaataaatcGCATATCTCTATGGTGTTTTTTTCTCTTGCCGTTAAGCCTGCCTGTGAGAGACTACAGCAAGTTACATGAGATGGAAGTCGGATGGTATGCGACTCATGTCCAACTAACGTcacttaattttaaaacattaacgTTTCTGTAAAAGTTAGTGTTAGAGATGAATGGCACGTGATTTCCGAAAAACAGAGAATATCAAGATGCTCTGTATTACCACAGGAGGGCAGATATTCCTTGAGTGCTTGGACAGACTGCGACACCATCATGCTGACTGCATGCATACTGATAATTCTGCTGCCAAAGCTGGATCCAATCTGCTGAGTCCAAAATCACTGCAGTAAACAGGTCTCGCAGAGAAAGGATGAAGACCTGAGGGGGGGAAGGGAGGAATGAGGTGATGAAAACAGACATCCTCTGAAAGATTTTGCAATGGATTGAGTTTGACCTCTGTGCCACCTCTGACCTCTGATGTCCATGCTGACCATCCTCTAAGGCCCGGTTTCATCAATCAGACACAATGACAGTTTATCTGCCTCAACACAGCCTCCAGCAGAGCAGAAAGTGCACGGTATATTCAGTCAGGGGCTAAATACCAGAAAgattatgctttttgtttttacgTACGCTGTGGATTTTAATCACATGTTCTCTGATTACGGTTTAGCAGAAGATGAAAAACGGTACACCTACAATTTGTAAGAGCAGAAATTACACAGCCGCTGCTTCACTctcatattttattaacatttatagtGCCCTCTACTAATATTggcacctttttttttaaatatgaggTTTTGAAATAAACGTCTTTTTAGTTTTACCTGTTGGTTCTGGTTATAGCTTTTGATGccaaaaaattgtaatattaatatttaaaaaaacattgaatattttttaaaataatttgtttatttcacaACATTTGTCCACTATATTTTACAAa

Function

GO:

id name namespace
GO:0031984 organelle subcompartment cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043919 lncRNA downstream 21812 17657994 ~ 17663102 (-) False XLOC_022247
TCONS_00043914 lncRNA downstream 234183 17446923 ~ 17450731 (-) True XLOC_022243
TCONS_00043907 lncRNA downstream 244976 17432598 ~ 17439938 (-) False XLOC_022243
TCONS_00043904 lncRNA downstream 255150 17427971 ~ 17429764 (-) True XLOC_022242
TCONS_00043902 lncRNA downstream 329212 17354153 ~ 17355702 (-) True XLOC_022241
TCONS_00044981 lncRNA upstream 41874 17881023 ~ 17885851 (-) True XLOC_022251
TCONS_00043926 lncRNA upstream 178051 18017200 ~ 18017871 (-) True XLOC_022252
TCONS_00043938 lncRNA upstream 198925 18038074 ~ 18057912 (-) True XLOC_022254
TCONS_00044726 lncRNA upstream 234566 18073715 ~ 18074419 (-) True XLOC_022256
TCONS_00043941 lncRNA upstream 280705 18119854 ~ 18122655 (-) True XLOC_022257
TCONS_00043918 mRNA downstream 27566 17655790 ~ 17657348 (-) True XLOC_022246
TCONS_00043917 mRNA downstream 175258 17477400 ~ 17509656 (-) True XLOC_022245
TCONS_00043916 mRNA downstream 200359 17472702 ~ 17484555 (-) False XLOC_022245
TCONS_00043915 mRNA downstream 214768 17454691 ~ 17470146 (-) True XLOC_022244
TCONS_00043913 mRNA downstream 234153 17432887 ~ 17450761 (-) False XLOC_022243
TCONS_00043923 mRNA upstream 7891 17847040 ~ 17859619 (-) False XLOC_022250
TCONS_00043924 mRNA upstream 9844 17848993 ~ 17866100 (-) True XLOC_022250
TCONS_00043925 mRNA upstream 154642 17993791 ~ 18017946 (-) False XLOC_022252
TCONS_00043927 mRNA upstream 181779 18020928 ~ 18030399 (-) False XLOC_022253
TCONS_00043928 mRNA upstream 181945 18021094 ~ 18024543 (-) True XLOC_022253
TCONS_00043921 other downstream 1982 17682818 ~ 17682932 (-) True XLOC_022248
TCONS_00043901 other downstream 508696 17176104 ~ 17176218 (-) True XLOC_022240
TCONS_00043900 other downstream 638530 17044294 ~ 17046384 (-) True XLOC_022239
TCONS_00043898 other downstream 700320 16983777 ~ 16984594 (-) True XLOC_022237
TCONS_00043893 other downstream 705999 16977930 ~ 16978915 (-) False XLOC_022237
TCONS_00043939 other upstream 224024 18063173 ~ 18063299 (-) True XLOC_022255
TCONS_00043945 other upstream 543307 18382456 ~ 18382551 (-) True XLOC_022260
TCONS_00043958 other upstream 770867 18610016 ~ 18611010 (-) True XLOC_022266
TCONS_00043959 other upstream 771978 18611127 ~ 18612421 (-) True XLOC_022267
TCONS_00043965 other upstream 920393 18759542 ~ 18777957 (-) True XLOC_022270

Expression Profile

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