RNA id: XM_036945143.1



Basic Information


Item Value
RNA id XM_036945143.1
length 837
RNA type mRNA
GC content 0.51
exon number 7
gene id LOC110499751
representative False

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 69881224 ~ 69891087 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tcgaggtgccttattgctattataaactgAGTAGTTTGGTGAGTCCGCAAAGGACACGACGTCGAAACGCTGCGATCAAATTGAAGGATTCTCCCACAACAAATACAGCACAAACATGCCAAACTGGGGAGGAGGTAACAAGTGTGGTGCATGCCAGGGGACAGTGTACCATGCCGAGGAGGTGCAGTGTGATGGGAAGAGCTTCCACAAATGCTGCTTCCTGTGCATGGTCTGCAGAAAGGGTTTAGACAGCAACAATGTGGCCATCCACGACACTGAGATCTACTGCAAGTCCTGCTATGGAAAGAAGTACGGCCCCAAGGGCTACGGCTACGGCCAGGGAGCTGGGACACTCAGCATGGACcgtggagagagactggggatcaAACCAGAGGAGACCCAGTGTCACAGACCCACCACCAACCCCAACCCCTCCAAATTCGCCCAGAAGTTCGGGGACTCGGATAAGTGTGGCCGGTGTGGGGAGTCAGTGTACGCTGCGGAGAAGATCGTGGGGGCAGGcaagCCATGGCATAAGAACTGCTTCCGCTGTGCCAAGTGTGGGAAGAGCCTGGAGTCTACCACCCAGACAGAGAAAGATGGCGAGATCTACTGCAAAGCATGTTACGCAAAGAACTTTGGACCCAAAGGATTTGGTTATGGCCAGGGAGCTGGCGCTCTGGTGCATGCCTAATGATGATCACCCTCAAGACAAGGCATTTCTGACTGTGAAAACCGCTGTGCTACGTTGTTTTTTTAAAGGCTGGCGGAGGGCCATAATAGGGAGGATTTACCATTTACAAATATACAATAAATAAAAAGCTTTACCTAAAACAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1509430 lncRNA downstream 135 69880641 ~ 69881089 (-) True G1322338
TU1509432 lncRNA downstream 666 69879515 ~ 69880558 (-) True G1322340
TU1509421 lncRNA downstream 5332 69872028 ~ 69875892 (-) True G1322334
TU1509375 lncRNA downstream 76129 69804491 ~ 69805095 (-) True G1322292
TU1509372 lncRNA downstream 81720 69798289 ~ 69799504 (-) True G1322290
TU1509440 lncRNA upstream 6661 69897748 ~ 69899703 (-) False G1322348
TU1509425 lncRNA upstream 54554 69945641 ~ 69948082 (-) False G1322337
TU1509427 lncRNA upstream 54554 69945641 ~ 69948082 (-) False G1322337
TU1509429 lncRNA upstream 54554 69945641 ~ 69947251 (-) False G1322337
TU1509426 lncRNA upstream 56321 69947408 ~ 69990817 (-) True G1322337
XM_036945131.1 mRNA downstream 51457 69678178 ~ 69829767 (-) False LOC110500965
XM_036945132.1 mRNA downstream 51457 69678178 ~ 69829767 (-) True LOC110500965
XM_036945130.1 mRNA downstream 98683 69678178 ~ 69782541 (-) False LOC110500965
XM_036945133.1 mRNA downstream 98716 69678178 ~ 69782508 (-) False LOC110500965
XM_036945135.1 mRNA downstream 149636 69678178 ~ 69731588 (-) False LOC110500965
XM_036945146.1 mRNA upstream 14334 69905421 ~ 69927630 (-) False LOC110499754
XM_036945147.1 mRNA upstream 14334 69905421 ~ 69927631 (-) True LOC110499754
LOC110490659 mRNA upstream 502174 70393261 ~ 70394050 (-) True LOC110490659
XM_021564126.2 mRNA upstream 504644 70395731 ~ 70397315 (-) True LOC110490652
XM_036945185.1 mRNA upstream 652289 70543376 ~ 70547418 (-) False LOC110490645
TU1509018 other downstream 318184 69562310 ~ 69563040 (-) True G1321997
TU1508670 other downstream 658196 69220303 ~ 69223028 (-) True G1321729
TU1508651 other downstream 724225 69155526 ~ 69156999 (-) True LOC110490790
TU1508586 other downstream 807948 69031026 ~ 69073276 (-) False G1321652
TU1508038 other downstream 1704842 68072401 ~ 68176382 (-) True LOC110513021
TU1509441 other upstream 7598 69898685 ~ 69899703 (-) True G1322348
TU1510302 other upstream 645365 70536452 ~ 70537139 (-) True G1323036
TU1510280 other upstream 652269 70543356 ~ 70545220 (-) True LOC110490645
TU1510499 other upstream 1134164 71025251 ~ 71039522 (-) True G1323207
TU1510608 other upstream 1311413 71202500 ~ 71237846 (-) False G1323296

Expression Profile