RNA id: XM_036945146.1


Basic Information

Item Value
RNA id XM_036945146.1
length 5109
RNA type mRNA
GC content 0.51
exon number 13
gene id LOC110499754
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 69905421 ~ 69927631 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGGGCTCCTCACGTTACAACTTTTCGCGCGGTGTCACAGGTAGAATGAGCGCCACCCACTCCTGTCCCATCTGTTTCCCTGAGCCACGCAAGTTAATTAGATGGAACCGCAGTGGGTCCGTAGTCGATACATGCAACAACAACGCCTCTGTCATTAAGGTTATTAATAGGGTTTCTAAGTGCGCGGCTATGCCACTCAAACACCATGAACAGCAGCAGTCAAACTGAACAGCACGAATCTCAGTCAAGACCGCGCGGACTGCCCCGCCAAGAATCTTTAGAGGCGTGGCTGTTGCCCCTTGCCTATTGGATAAATCAATTGTACGCGTCACAACATCTAGATGCTGATTGGCTCGACTGAGTGAAACGCATGAGAGCGCCAGAAAAAAAAGCTTTAGCGGGTGTTTTTGGTTGTAGCTATTCCTGTTCAGTAATGCAATTCCAACACAAGTAACTTCAGCGGAACAGGAGAAGTTTTACAGCTGGATATTAGAAGAAAGCCCGCTTATTTAAGAAATTAAAGTTATGTTGATTTGAGTTAAACAACGTACCACCAGTAAGTCTGTGCAATTGGAGATACTGTACGTTGGTATTGACAACTTTATCTTCTTACGTTACGTAGGAAACGCTGAAGAAGATGGAAGTTGAATGTCTAGCTTTGAGAGATCTCATAAGTCCAAAGAAGAGCAAAGCAGACATGGAGGAAGTTGGAAGCAGAAATGATCAGAAGGAAAACAGATGTGTCGAGCGAAGAAGAACCACCCCTCACAAGATGGACACCACGGCCACCATGCTGCTGTATGGCAGTAAGCCTCCCACCCCGGAACACCTCCAGAGCACCCCTGTTAAGCCTTCTGAGCGGGGGGCCCCTCCCCACGCGGACCCCTGGACCCCCACGGCCAACCTCAGGATGCTCATCAGTGCTGCCAGCCCTGACATCCGCGACAGAGAGATGAAGAAGGTGCTGTTTAGGCCCATTGAGAATGAGAGAGCAGTGGAGGATGTCGAGGTGGATGGCCCGTGCCAGTTTGATGTGgtggacgaggaggaggaagagggggaaaggAAGCCCAGCAGGAAGCAGAAGAGCCTGGGCCTGCTGTGCCAGAAGTTCCTGGCCCTGTATCCGGACTATCCAACCTCTGACACCATCAGTATCTCATTGGATGAGGTGTCTACCAGCCTGGggGTGGAGCGGCGGCGGATCTATGACATCGTAAACGTCCTGGAGTCTCTGATGATCGTGGGGCGCGTGGCTAAGAACCAGTACGTGTGGTACGGGCGGCGGCGCCTGGGGTCCACCCTGGCCGAGCTGCAGAGGATGGGCAGGCGGCAGCGCTACCACCTGCACATGGAGCAGGCCGGGGAGGGTGGTCACAGAGAGGGAGCCACCACACACACCCCAGAGGAGGGAGGTGAAGGAGATTCCAGCTGTGCGGCCGCCAGCACGAGGAAAGACAAGTCCCTACGCATCATGAGTCAGAAGTTTGTCATGCTCTTCCTGGTGTCCAGGACCCAGACGGTCACTCTGGACGTGGCCGCCAAAATCCTCATTGAGGAAAGCCAGGACCCCGCCAGCCACAGCAAGTACAAAACTAAGGTGCGGCGGCTGTATGACATCGCCAACGTCCTGACGAGTCTGGGATTGATCAAGAAGGTCCACGTccgggaggagagggggaggaagccTGCGTTCAAGTGGATCGGCCCGGCAGACTTCCACAGCAGACATGAGGACTCAGAGGCTGTGGCGGCCATCGCTCTTCCGGAGGCCATCGCTCTTCCGGAGGCCATCGCTCTTCCGGAGGCCATCGCTCTTCCGGAGGCCATCGCTCTTCCGGAGGCCATCGCTCTTCCGGGCGGCAGGAAACAGAAGCTGGCACGCCATGCCTCCTTCAATGTGGTGCCCACCTCCGTGGCCAGCCAACGCCGTGTCAACTCGGCGCCCAGCAGCCCACGCAGAGAGGTCACGGGTCTGCTTCCCCAGTCAGTGGACTATTCCAGAAGTTGTGTGAGCAACAGCGCTGTGTGCCGGCTGCAGTTTGGAACCTCTGTTACAGGTGTCTCCCACCCCAGCGGCGGACTTCAGAGCCCCGCCCACAGTGACGGCAACTCCCTGCTCTGCTCCCCGGGCCTAGCCCCCCTGGCCGTGCCCGTCCACCCAGAGGGTTCATACGTGGGACCCCTGTCCCCCCATCCCCACCACATGGCCTATCTACCCAGCCTGTCCCAGGCCTCGGTGGTCATGCTGTACGGAGGTCCGGAGGCGCAGGATGGGCTTGACTGCCTGACCACGGAAGTTCAAAGGTCACCGGGGTCAAGGTCCAGAGAGAACAtcctggagaagaggaagaaggatgaaggagtggaggagaagagggagtcaCCTGAGACAGAGCTATCTGAAAAGagaaggagagtggagggaAGGAGTGTGGAGGGAAACAGCTGTCAGATGACCACCAGCCCAAAGACCAGCTCCCTAGGACACCCAGGGGGGCTAGTCAGGGAAGAGGCCCTATTGAGAGTCCTCAGAGACGGGGAGGTGGGCAGACAGAGCCCCCACAACAACCTGGTCCGGCCTTCACACTACCTCTATGTGCCTAACTCTGCAGgtCTCAACAGTCTCAACTTCCTCCTCTCTGCTGGTCAGACGACAGGCGGCCTGACTCTACCTGCTGGCACCCTGCCCTATGTCCTTGtgtcctcctccaccctctccccctaCCCACTCATGGCCAACCGGGGCGATGCCAATCTCAATTTCAACATGTCCACCATGATGTCCCCCGCCTGCTTCGTGGTGGGATCCGCCGGGCCCTACACAGTGGCCGGAGCCCCGGAGTTCAATGGGGGGGCAGTGGCGCCGGCCCTCTCCAGTCCAGAGCAGCACCCGCTGTTCGGGTCGGCACCCATACCTCCACATTCTCCCTTGGAGACCAGGCCGTCTCTGACCTTCATCCAGACAGAGGCACAGACACCACAGACTCCCAAGGAGGAGGCGGCAGCTGGCGGTGGCTCCAAGGCCTTCTTCCAGACGCCAGGGACCCTGGGAATGGCCACCACAACCCCCGTGGCCCGCCGACGAGGCTCCGCCCAGAGGAGGCTGGACATCAGCCAACCACTGACCAATTAGAAGTCTGGGGACCTTTTAGAGTGGCAGTGGCTGTTAGCTATAACCTGAAAGACTGCCTAGTGGCCTGAGAGGAATGGACAAATGTTGCTCTCCGGCTAAACGTGCTCTGACTGCGCTAGCTTTGGCTTTAGTCCCCACGCTCTGACTCTCAGGGTATCTTTTCTGTATGACCGAACTGTGTTGCTTTCATACCACTGGTGCTTCGCCTTATGAATGAATGCTAGTCTATACGATACCTCCTTTAAGTGCCTCATCATGTAGGGCGAAGTTGCCCCTAGACTCTGATTTTGGGCCAGTTTGCAgtttccccactaatggttaaggttaggattgggggaagggaagctgatcctaggggaaacttcaccctcgAGTTCCTCATGATTGGACTGTGGGACACCGATAACTATCAGAGGACACAGGGAAGCAGTGTTGTCGTCTTTTGTTTTAGTGCCCTCCTGTGGTGGGAGTTAGGTACCACTCATATTTATTTTTCTAGTCCATCTTCCATAGAAAGATTGAGCTACCTTGGTAATCGCTCCACCCATGACTTTATTATATCCCAACGTTATTTATATATTAACTAATATATCTGTTGAGTAACAATTCTGATGATGTTACTCTACTTTTAGCACTAAGTATTTAAGAATATACTTCTGATTGTTGAGTTTCGCTGGCTCTGGAGGGATTCTGTAAAAACGGTATCCGTAGGAAAAGGGAAAACAGTTGATCATAGGTGAATGATATCTGTGGAAGCTGAAAGGTTTCCCATGATGACACATTTCAGAAACTGGTGTTGGTAATAAGTCATGACGTCGAAGAGATATCGATACGCTTCTCGGTTGCACTTCTAGCGTGTAACTGACCTGGCTCTAAGAGAGGTTTAAAAACCACTGGTTTTCACTGTGTAAATTAGGTTTTAACTtaaactccacccaaaaacgaTATTTTGCTAtgtgtttcattagtccattgttgatatagtccaaAATGTTTTGGGTGGAGTTCTCCTTTAAGCTGTCACAGCAACACATTGGTGAGCTTAAGGCCTACAAAATGGCTGCCAGGGTTTTTGGTACAAAGACTGGCATCTTGGCCACTCCAAAGGGTTCTGTATTTGTACAACACTCATGTGGTTTACAGGTTTCCAATTGTTGGGCTTTAAGAATAACACCAAATGCCAGCATCGCTCTCTGTCAATGTGTATGTGCTCACGCCACCACATGCCAGCATCGCTCTCTGTCAATGTGTATGTGCTCACGGCACCACATGCCAGGTGAAAACTAAATGTGAAATGATTTGATGATGTTACAAGATACTTGAATGACTTAGTTATCCAGCGGTGTATACTGGAGACTAGAGTGAAATATCAAAGTACTGTATTTAATGCATTAGAGTTTGGCCTCtggaatattttttgggggggagtaATTGAGGAAAAGTTACATTACACCAAAGGGTGCTGATCATCTACTTGAACTGTAGaatacaggaggttggtggcaccttaactggggaggacgggctcatggtaatgaccGGAGCGGAatctggaatggtatcaaatacatcacacATGGCttacatgtgtttgataccattccatttgctctgttctggccgttatgagccgtcctccagtCAGAGGCCTCCACTGCTGTAGATGTGTTGTTCATGTACAGAaatctctctttttttttaaaccaggaaTTATTTTTGTATATTGTATTCATATGTTTTTAATTATTACTTCAAAACATTGAAATGTTTAATTTAATGCCGCTTCTTATCATAAAATAATAATTACACTGCTAGTTTCTGTAGTTATCCGTCCACTGCTTTGTAGGGAACCTTTtctaacattacaacacattgtTATTTTCACCGTGCTTACTACAGCCTGTATGTATGTTATGGGACAAACAGGGTTTCTCTCTAGACATCCACAACCTTTGTAATAAAAAAGTGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1509440 lncRNA downstream 5718 69897748 ~ 69899703 (-) False G1322348
TU1509430 lncRNA downstream 24332 69880641 ~ 69881089 (-) True G1322338
TU1509432 lncRNA downstream 24863 69879515 ~ 69880558 (-) True G1322340
TU1509421 lncRNA downstream 29529 69872028 ~ 69875892 (-) True G1322334
TU1509375 lncRNA downstream 100326 69804491 ~ 69805095 (-) True G1322292
TU1509425 lncRNA upstream 18011 69945641 ~ 69948082 (-) False G1322337
TU1509427 lncRNA upstream 18011 69945641 ~ 69948082 (-) False G1322337
TU1509429 lncRNA upstream 18011 69945641 ~ 69947251 (-) False G1322337
TU1509426 lncRNA upstream 19778 69947408 ~ 69990817 (-) True G1322337
TU1509433 lncRNA upstream 49076 69976706 ~ 70001692 (-) True G1322341
XM_036945143.1 mRNA downstream 14334 69881224 ~ 69891087 (-) False LOC110499751
XM_036945142.1 mRNA downstream 14344 69881224 ~ 69891077 (-) False LOC110499751
XM_036945145.1 mRNA downstream 14350 69881227 ~ 69891071 (-) True LOC110499751
XM_036945144.1 mRNA downstream 14779 69881224 ~ 69890642 (-) False LOC110499751
XM_036945131.1 mRNA downstream 75654 69678178 ~ 69829767 (-) False LOC110500965
LOC110490659 mRNA upstream 465631 70393261 ~ 70394050 (-) True LOC110490659
XM_021564126.2 mRNA upstream 468101 70395731 ~ 70397315 (-) True LOC110490652
XM_036945185.1 mRNA upstream 615746 70543376 ~ 70547418 (-) False LOC110490645
XM_036945178.1 mRNA upstream 622958 70550588 ~ 70558749 (-) False si:dkey-14k9.3
XM_036945177.1 mRNA upstream 622958 70550588 ~ 70558751 (-) True si:dkey-14k9.3
TU1509441 other downstream 5718 69898685 ~ 69899703 (-) True G1322348
TU1509018 other downstream 342381 69562310 ~ 69563040 (-) True G1321997
TU1508670 other downstream 682393 69220303 ~ 69223028 (-) True G1321729
TU1508651 other downstream 748422 69155526 ~ 69156999 (-) True LOC110490790
TU1508586 other downstream 832145 69031026 ~ 69073276 (-) False G1321652
TU1510302 other upstream 608822 70536452 ~ 70537139 (-) True G1323036
TU1510280 other upstream 615726 70543356 ~ 70545220 (-) True LOC110490645
TU1510499 other upstream 1097621 71025251 ~ 71039522 (-) True G1323207
TU1510608 other upstream 1274870 71202500 ~ 71237846 (-) False G1323296
TU1510607 other upstream 1275110 71202740 ~ 71237846 (-) True G1323296

Expression Profile