RNA id: TU1510280



Basic Information


Item Value
RNA id TU1510280
length 1062
RNA type TUCP
GC content 0.43
exon number 5
gene id LOC110490645
representative True

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 70543356 ~ 70547418 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AATCAGTGTACAGCAGAAGACCTGTGCTTCTCCCTACAGGAGACCCTGTTTTCCATGCTGGTGGAGATCACAGAGAGGGCCATGGCTCACTGCAGCTCCCAGGAAGTGCTCATCGTTGGAGGCGTTGGCTGTAATCTGCGTCTGCAGGAGATGATGGGAGTCATGTGCAAGGAGAGGGGTGCAAAGCTCTTTGCTACAGATGAGAGCTTTTGTATCGATAATGGAGCAATGATTGCACAGGCTGGCTGGGAGATGTTCCGATCCGGTCAGACAACTGAGCTGTCAGACTCATGGATCACTCAAAGGTACAGAACAGATGAAGTGGAGGTGACCTGGAGAGATTGACAGCTCACTACCCAACAGGCTGCAACTTGCACCCACCTTCCCTTTACCTGGATTGTATGTGTTGTGTCATGATGGAGGGAAAGAATGTAGAAATATTCTATGCCTCACTTCTATTGTTCTGAACTCCTCAACACAACAGTTGTTAGCCACACTCATTAGTATTTTAGGCCTAGATTAAATCCGGACTGCAGAAAATCTGCGCGATTGAAATGTTCCCGCATTTGGAGAAAACACCTTTATCTTTTGATCTTTTTGTCTTTCTCTAGCgctggattcaatctgtatcgcagAAGATCCGCATTAAAATAAGTCATTTCTGATTGAGccaacatatgcagcgtttaccgtgaatgaagTCTCCGCGAACGCGGGAACTATGCCTTTAAATGTCAATATAATGCAGATCTTCCGCGATACGGATTTAATCCAGCCCCTAGTCCACAATATAGCCACGTTTATACCTGGTGTTAACATGTCCTGATCGTGTCAACATTCTGATTGCGCCCATATTTTTTGACAAGTGTAAACAATTAAAATTAGTACCTCCGGAGATAGTCAGTGATGCGTTGTAATGTAGCTAGATTTCTTACAACTGTAAACATCTGAATTATCAAACCATTTAAATCATTCcttctaaaatcattgacaggtggcAATATTGGCTTAACATTAAATACAAATTTGCTTTACACTGAAAGCTGAAATGTACCTTTTTCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1510298 lncRNA downstream 11473 70531587 ~ 70531883 (-) True G1323032
TU1510272 lncRNA downstream 41424 70499151 ~ 70501932 (-) True G1323010
TU1510267 lncRNA downstream 51615 70491511 ~ 70491741 (-) True G1323005
TU1510262 lncRNA downstream 56563 70486285 ~ 70486793 (-) True G1323000
TU1510261 lncRNA downstream 57218 70485623 ~ 70486138 (-) True G1322999
TU1510308 lncRNA upstream 36954 70582174 ~ 70583076 (-) True G1323042
TU1510334 lncRNA upstream 106838 70652058 ~ 70691752 (-) True G1323063
TU1510361 lncRNA upstream 152725 70697945 ~ 70698250 (-) True G1323082
TU1510362 lncRNA upstream 156827 70702047 ~ 70702459 (-) True G1323083
TU1510364 lncRNA upstream 159890 70705110 ~ 70705420 (-) True G1323085
XM_021564126.2 mRNA downstream 146041 70395731 ~ 70397315 (-) True LOC110490652
LOC110490659 mRNA downstream 149306 70393261 ~ 70394050 (-) True LOC110490659
XM_036945147.1 mRNA downstream 615725 69905421 ~ 69927631 (-) True LOC110499754
XM_036945146.1 mRNA downstream 615726 69905421 ~ 69927630 (-) False LOC110499754
XM_036945145.1 mRNA downstream 652285 69881227 ~ 69891071 (-) True LOC110499751
XM_036945178.1 mRNA upstream 5368 70550588 ~ 70558749 (-) False si:dkey-14k9.3
XM_036945177.1 mRNA upstream 5368 70550588 ~ 70558751 (-) True si:dkey-14k9.3
XM_036945179.1 mRNA upstream 13776 70558996 ~ 70565537 (-) False LOC110515225
XM_036945181.1 mRNA upstream 13776 70558996 ~ 70565537 (-) False LOC110515225
XM_036945180.1 mRNA upstream 13776 70558996 ~ 70566048 (-) False LOC110515225
TU1510302 other downstream 6217 70536452 ~ 70537139 (-) True G1323036
TU1509441 other downstream 643653 69898685 ~ 69899703 (-) True G1322348
TU1509018 other downstream 980316 69562310 ~ 69563040 (-) True G1321997
TU1508670 other downstream 1320328 69220303 ~ 69223028 (-) True G1321729
TU1508651 other downstream 1386357 69155526 ~ 69156999 (-) True LOC110490790
TU1510499 other upstream 480031 71025251 ~ 71039522 (-) True G1323207
TU1510608 other upstream 657280 71202500 ~ 71237846 (-) False G1323296
TU1510607 other upstream 657520 71202740 ~ 71237846 (-) True G1323296
TU1511211 other upstream 1312063 71857283 ~ 71922908 (-) True LOC118938840
TU1512018 other upstream 1502744 72047964 ~ 72050171 (-) False LOC110500989

Expression Profile