RNA id: XM_036945177.1


Basic Information

Item Value
RNA id XM_036945177.1
length 4704
RNA type mRNA
GC content 0.49
exon number 10
gene id si:dkey-14k9.3
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 70550588 ~ 70558751 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGTAATTCCAGGATCACTTCCGGATTGCTTGTCGTTCGTGGCTACAAGCATGTTATTAACTGGTTTACTATTAGTAAAACATTCGTAGACAAAGCAAACGTAGTGTTCACAACATTATTTGCTACAATCTGTAGCGTTCAGGAAGGAACCGATGCATTAAATCCCGTCGTCTAACGGGATCCTCCATCTAACTTTTGTAACAACAGTCAGCATTTGGCCCACGCGACAAAATGGACTCTGAATTTTCGGCAGCGGACAATGCAGgtctccctctcctctccctctgcctcttggTTCCACCCATTCAGCTTATGTCCGCGTCCATATGGCAGGTGGTGCAACAGCGAGATGCCATGAATTATGCAATGCTGGCAGAGTTTGTCTCCCTGGTGACAGAGATGGTCCCTGAGTTGCTGATCTATAGGCACAGggcccaacttattttgggattGCGAGCAAGGCACATTCTGGAGTTGTGTCGCAGTGAGCATCCTGTAGAACCTCAGGTCATCTTAACCCAGCTGTACATGATTCAACCACTTACCCACTTCAGTAATGATGTAAGTGACACAGAGGTGGAGTCGTCAGAGACTCATTTTCTGGAGCTGGTCCAGACCCTGCTTAAAGACCCTGATGAGAGAGAGCATTTTTTCACAGAGATATTCCCAGTGGAGTATGGACCACAATATGACATCGAGCTGCAGACTCTACTGTGGGAGTTCCTGTCCAGATTGGTTCAACTGTTACCGACCCCTGACCTCGCACAGACAATGGCATGGCTCGGTACTGCCCCCTCAGTCTTGGATGATTGTGCCCATGTTATATCTCATCCAGCAGATCTGAAGAGTCTTCTCCAGCACCATAAACGTCTTGGACATTTGGAGCAACATGTACCCCCCTGCGCCATGGGCGACttcatcctgtcctctctctccatcccgccACACAGTAGAACCATGATCAGCACTGAGCAGACCACCTGTGACAACCAGTCAGAACCCTTGGAGGAGTTTGTGGATGACTTCGATGTGGAAATTGTAACTCTGACTGATTATGAAGAGGTTGAACTAGGTTTGAgtcaggaggaggtggaggatgggaaCGATGACGAAGGACAGACCATGGAGGACAAGGAAGAAGAGCCTAAAGAAACGCCCGCTGAagaagtggaggaagaggagaaagtgATGGAGGACCATGAAGAGGGGGACTTGGAGAGCAACTCACATCTAGAAGAAGCTGAGAATGACCCAGCATCCTCCCATCACCAAACATCCTCTGGGCCCCACATCTGCTCTGTCTGTGAGAAGAGCTTCAAGTTTGCCTCTGCACTAATAGCTCATCAGGTTATCCATACAGGAGAGCGCCCGTATGTGTGCCATCTGTGTGGACGGTGTTTCTCCTTCAGGCAGTCTCTGGACAGGCACAAACAGACACATAAGGATGGGCGCGTTTACGACTGTTTAATCTGTGGGGAGACCTTTCAGTCCTTGTCAGCCCGCACAGAGCACAAGAAGAGCCATATGGAGCAAGGCGCTTACCAGTGCTCACAGTGCCACAGGAAGTTCAACTGGGCGTCGGCCATGGTGAGACACCTGAAGGCTCACACAGAGGGCACTGAGGTCAAAACGCAGGAACTTACAAAAAGCCTGAAGTCTGAGAAAGAGGATATAGGGATTAAAGAGATTGTAGGAGAGGTGGCTATCGAACCCCCTGAAACAGACCCGGTGTTGGAGGATGGAGGGAAATCCTGTCACAATCCACAGGAAGGAGCGGGTCAGTCCACTTCATCTGAGCCTGCAGTGTTGGTGCCTGGACTTCTGGACAAGGTTGTAACACTTGTCACGGTCCGTACCAGTGGTAGGAAAACAAAACCGACCTTGAAGGTGCAGATGGTGAACCTGCAGAAGCTCAAGGGAAAGGTCGCCACCCCAAAGAGGACGGATGGAAGCTTGATGAACCCCCAGGGTTTCAGACCATTGCATTTTAAGAGagTGACACTGAGACTCCGATGTttttactttaaaatTGAGGAACACTCCTATGGCTCACCAGTGGTCTCAACAAAGGAAGGAGATACAGGGTGGTGTCCATTCATCAACTCAGACGAGGCGTCCGTCCAGCAGCACATTGAGACGAACCACTCGGGGGAAGCGCAGGAAGACGCTCCGTCTGCTCCTCACCAAACAGGCCAAGCGGGACACTATGATTGCCCAGACTGTAACAGCAGCTACAAGTTTCAGTCCTTACTGAGATACCATCGGCGCGTCCACACCGGCGAGCGCCCATACGTGTGCCCTCAGTGCGGACGCCGCTTCTCCTTCAAGCAGTCACTGGAGAGGCACGGACAGACACACAAGGATGGGCGCAAGCATGACTGTCTGATCTGTGGGCAGAACTTCAAGTCCTTGTCAGCGTACACAGAGCACAAGAAGAACCACATGGAGAACGGTGTGTATCGGTGTTCGGAATGCGACCGGCGGTTCTCCTGGAAGTCTGCGCTGGTCAGACACCTCCGGACTCACACGGAGAACGCCACCGAGGCTGAGCTCTCTTACAAATGCCCAAGGTGTGACTTGGGATTCAGCAGTAGTACGTACCTTAACAGGCACCTGCTCACACACCAAGAGGAGAGGTTGCATGTCTGCAGCTGTGGCAAGAACTTTGCCTACAAGGCTGCTCTGACCGCACACCAGCGCACCCACCTGAAAGAGAGGCCACACCAGTGCaagcagtgtggaaagggtttcCTCTACAAGGGAGGGCTGGTAAGTCACATGAAGATCCACTCCCAAGAAATGCCTTTCATGTGCTCAttctgtgggaagagcttcaagagggagaggaacatgaaGAAACACGAACGCTGCCACACCAGGGAGAACGTGTTCAGCTGCTCGCAGTGCGACAAGACCTTTGTGTACAAGGCCACACTGACCAGGCACGAGCTAACCCACTCGGGGGAGAGACCGTTCCTGTGCTCCGATTGTGGCAAAGGGTTTTTCTCCCATGCGGAGCTTCTAAAGCATGAGCGCTTCCACACGGGCCACAAGCCGTTCCAGTGCTCCCACTGCGGGAAGCAGTTCACCCAGTCCTGCTACCTGACCATTCACCTGCGCTACCACACAGGGGTACGGCCTTACTCCTGCACCCATTGTGACAAGAGCTTTCTCAGCGCCAACCGTCTGAAGAGACACCTGAGaacccacacaggagagaaaccctaCCTGTGTTCAGAGTGTGGCAAAGGATTCAAACAGTCATATCACCTCAAGATGCACCAGCAGACTCATGCCACCAAGATTTACTGAGGCATGATTGTGTCTCTGTCCAGATTTCAGTCAAATTATTTGGTAGAATGCCATGGTGAGTTAGCTGTCGACTGTAGACAACCAGGAGTGTTAAAATATAAATACTGAATAATAATATAAATTCAAAATGCAACaaattcaaagattttactgagttacagttcatataaggaaatcattcaattgaaataaattcattaggccctaatctatggatttcacatgactgggcaggggtgcagccatgggtgggcctgggaaggcTTAggaccacccactggggagccagaacCAGCCAGTCAGAATGAGTTTATCCtctcaaaagggctttattacagacagaaatactcctccatttcatcagctgtctgggtggctggtctcaaatgatcccgcaggtgaagaagctggatgtggaggtcctgggctggcgtggtctgcggttgtgagaccgcCAACAactctgccaacagctctggtgggcattcctgcagtcagcataccaattgcacgttccctcaaaacttgacgcttcatctgtggcattgtgttgtgacaaaactgcacattttaaagtggccttttatggtccccagcacaaggtgcacctgtgatcTCCCATCAGAtccttgggctcccgagtggcacagcggtctaaggcattgcatatcagtgctagaggcgtcactacagaccctgattcgatcccaggctgtatcacaaccggccgtgatcgggagtcccataaggtggAGGACAATTGGGCCAGCGTCTTCTGGGTTAGGGGAGTTTGGctatcattgtaaaataagaatttggtcttaactgacttgcctagttaaataatgatcatgctgtttaatcagcttcttgatatgtcacacctgtcaggtggatgtactATTTTGGCAAGGTAGAAATGCTCCCTAACACAGACAAACATTTTTGTGCATGAAAATTGAGATaattaagctttttgtgagtatgaaACATacctgggattttttatttcagcacatgattacacatttatatttttgttcagtatattagtGGTAATTCCTAATCTATAGATTCATGAAATGCATTTGAATTCTTTCTAGCTTTCCTCAGCTGAACTACTGTCATTGTTACTCATCAAGGCACATACAGCTCTTCTGTGAGCTGAATCACTCGTGACACAACTTTGGCCTGGATTTAATCTGTAGAGCCCTGGCTGCAATTAATCCCAGAAAAATTTTTGTTTTTGGTTTATCACAATGTAGAAGTACTAAAAGATTTGTGCCTCGTGTCCGTCTGCTAAAATGCATTTTATATGTATAGTACATTGTATTTTCATAGAGTTGTAGCTCAAATGAGTAATGAAGAGACTTCAATGAACAATACAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1510298 lncRNA downstream 18705 70531587 ~ 70531883 (-) True G1323032
TU1510272 lncRNA downstream 48656 70499151 ~ 70501932 (-) True G1323010
TU1510267 lncRNA downstream 58847 70491511 ~ 70491741 (-) True G1323005
TU1510262 lncRNA downstream 63795 70486285 ~ 70486793 (-) True G1323000
TU1510261 lncRNA downstream 64450 70485623 ~ 70486138 (-) True G1322999
TU1510308 lncRNA upstream 23423 70582174 ~ 70583076 (-) True G1323042
TU1510334 lncRNA upstream 93307 70652058 ~ 70691752 (-) True G1323063
TU1510361 lncRNA upstream 139194 70697945 ~ 70698250 (-) True G1323082
TU1510362 lncRNA upstream 143296 70702047 ~ 70702459 (-) True G1323083
TU1510364 lncRNA upstream 146359 70705110 ~ 70705420 (-) True G1323085
XM_036945185.1 mRNA downstream 3170 70543376 ~ 70547418 (-) False LOC110490645
XM_021564126.2 mRNA downstream 153273 70395731 ~ 70397315 (-) True LOC110490652
LOC110490659 mRNA downstream 156538 70393261 ~ 70394050 (-) True LOC110490659
XM_036945147.1 mRNA downstream 622957 69905421 ~ 69927631 (-) True LOC110499754
XM_036945146.1 mRNA downstream 622958 69905421 ~ 69927630 (-) False LOC110499754
XM_036945179.1 mRNA upstream 245 70558996 ~ 70565537 (-) False LOC110515225
XM_036945181.1 mRNA upstream 245 70558996 ~ 70565537 (-) False LOC110515225
XM_036945180.1 mRNA upstream 245 70558996 ~ 70566048 (-) False LOC110515225
XM_036945182.1 mRNA upstream 245 70558996 ~ 70566048 (-) True LOC110515225
XM_036945176.1 mRNA upstream 6937 70565688 ~ 70571314 (-) False LOC110490632
TU1510280 other downstream 5368 70543356 ~ 70545220 (-) True LOC110490645
TU1510302 other downstream 13449 70536452 ~ 70537139 (-) True G1323036
TU1509441 other downstream 650885 69898685 ~ 69899703 (-) True G1322348
TU1509018 other downstream 987548 69562310 ~ 69563040 (-) True G1321997
TU1508670 other downstream 1327560 69220303 ~ 69223028 (-) True G1321729
TU1510499 other upstream 466500 71025251 ~ 71039522 (-) True G1323207
TU1510608 other upstream 643749 71202500 ~ 71237846 (-) False G1323296
TU1510607 other upstream 643989 71202740 ~ 71237846 (-) True G1323296
TU1511211 other upstream 1298532 71857283 ~ 71922908 (-) True LOC118938840
TU1512018 other upstream 1489213 72047964 ~ 72050171 (-) False LOC110500989

Expression Profile