RNA id: XM_021564097.2


Basic Information

Item Value
RNA id XM_021564097.2
length 4090
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110490632
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 70565688 ~ 70571698 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGTGGAAAGGCCAAGCGGATGCTTCATATTTATACATCCAGTACCTGTCTCATTGTTCAATCTGTGATATAGCGTTTCCCATGATCGTAACTTTTATTCTGAAGGCGAATATAAACCGGAACTAATGTTTTTTTAAGCGACTTCctgcaaaatgagaaaaaaaagaataACTTCCAGGTAAACAGATATTTCAGCCAAATGAATCAATGATTGCTTGGGTTTAGTTTAGGACGTCCCTGTGACTGATAATAATGGATTATAGGAATTTAACGGAGCCGGTGGTGAATACGGGGTTATCTTTTCCTCTACCTGCCCTGCGCCTGTTCATCCCACCGCTGCGGCTGTTTTCTGCAGCGATGTGGCAAGTGGCCCAACGAGGGGATATAATGGGATACGGGAAGCTGGAAGAGTTTGTGACATTTGCTACAGAGACGGTTCCAGAGCTGCTCAGTTTCAGACAGAGAACCCAGCTCATGTTGGGCTTACGAGCAAAGttGGTTTTGGAGTTGTGCCGCACGGAGCAGACAGCAGGACTTCAGAGCCATCTGGACAGGATCCACGCTGCAAGATCACATCCGGGGGATCCAGACTTTTGTTGTGCAGAAGCAGAAGCCTCTAAATCAAATTTCCTTGCACTGGTACAAACTCTTATCCAAGACCCAGTTGAGAGGGAACATTTCTTCCAGGAAGTGTTTCCTGTAGACTATGGACCCAAGTATGACTCTGCCCTGCAAGGATTAATGTGGGAGTTTCTCTCCAGGCTGGAGCAGCTCCTTCCAGTACCAGACCTCAAACAGACAGTGTCTTGGCTCAATGCTGGACCCTCTGTCTTGGAAGAGTGTGTCAACTCTCTATCTCAGCCTCTGCAGTTGAAGACTCTACTGCAACATCATAGAGAACTAGGATATTTGGACACCAATGCAACTTCTTCCTCCGCTGCTGGCGACTGcatcttctcctctctgtctctcactccggTAGTGGTGGTGGCCACtagaaagacagaaacagagatcCAATCAGAGTTGATGGATGGTTGTATGGACCCAGCCTTATATGGTGAAGAGATGGAAACAGAGTCTGTAGTAGTGACTGAGTATGCAGAAGTGGAGCTGGGGACCTGTACATACACCAGAGAGGAAAGGGAGTTTAGTATAGAGAAGACTGAGTCACAGAACCAAAGAGACAGTCAGGCTGACTTGAATGGGGAAGAGCGGGAGATGGTAGCCAATGCAAGCGAGGAAGAACGTCaagagggagaagtggaggttatTTGTGAGGAAGTGGGGCATCCTAACGGAGACGCTGCGCTTGTTTCAGAGAAAACCAGTGCCATGAACATAGAGGAAGCCGTTTTCTGCGCAGAggtgggggatgtgtgtgtggatctgGAGTCAATGAATAGAGAGGTGGAAATTATTTATGAGGAGGTGGAGCATGTTGAACATCCGGAGTTAGTTGGGCCTATATGTGCAGAGAATACAATTGACAGACCGTCCAACCACAATGAGAACCCACATGAAGAAAATGATTTCACAGAGGAGGGGCTTGAGAAGGACGAGCAGGAGAGAAATGAAGCTGGTTATGTCCCCCAAACTGTCACGGATCAAGGAAGTTCCCAATGTACGCCACAACAAGTAATGAACCAGCCAGAACTGGTCCCATCCTGTCTGCACCAAAAACCCACATTAGGGTTCCAGAGACTGGACGTCAGTGTCCTGCCTCTCCAAATGTCCTCCCCCTCTCAACCATTGAGAAGAAACACAAGACTCCAGATGAAGACAGTGGGATCAAGAGGTCCCAATGGAGGGCAGCTCAAGGCATTGGAGGAGGCTAATGGGACCTGGGGTGTCCCTTTATACCGGTCTCCAGACCCAAGGGAAGACTCTGAAGACCTCAGCGCCACTTCTGACAGCTCCACAATGAATGGAAATAAAGGTGGGACGGTGGAGGCTCCCTCTCTGGTCTTCGCCTGCTCTCAGTGCTCTTTTAACCATGCCGACGAGGTGAACCTCCGGCAACACCTTAAAGCGCTTCACCCAGAGGAGTACAGAAGGATGCTTGCTGCTGGAGAAAATGAAACAGAAACCCCTCCAGGGTCTTCCAGCAGCACCCCTCTGAACCCATGTCTCTCAGACATTCCCCACACACTGGGGAAGTCTGGCAGGCATACATCACACTCCAAAACATGCTCTGTGTGTGGAAAGACCTTCTCTCGAGCGACAGATATGAGGAGACACCAGAGATCCCACACTGGGGAGCGGCCTTACAGGTGCATCCAATGTGGGAAGACTTTCCAGTACTCCTTCGACTTGAAAAGACACCAGCGAAAGGGCCTAGGGTCAAGGCCGTTCCAGTGCTGCGCGTGTGGAGAGGGCTTCGATCGGGAGGAAGATCTAAAGACACACTGCAGTGTGGCTCATTTAGCAGAGTCGCCAGTCTCTGATGACTTTGCGATCAAGTTAAACCTCCCAGCAGGCCTTGAGAGTGAGCAGTGTCCCAGCGAAGAGGGTGAACACAAATGTCCAGAATGTGACATGTCTTTCAGTCAGATATCCCAAATGAAGCGACACCAGCTGATTCACTCCGGTGGTGACCCGCTGCAGTGCAACCAGTGTTTGAAGAAATGTCAAAACTCTGATGCCCTCACAAAACACATGCAAATGCACAATGGCGCGCGACCATTCCAGTGTTCAATATGCAAAATTAACTTCACGCAGCTAGTTTGTCTTAGGCAACACTATTTGAATGCTCATAAGGAAGAGGGTTCATTTCTGTGTTCCCATTGTCCTAAAAATTTCTCAAGGCTATCGAACTTGATCAAACACCAGAGAACTCATACAGGTGAGCGGCCTTACCAGTGCTCTCATTGTCCAAAGAGATTCACACAACTACAGATCTTGACTAGACATGAgagaattcacacaggagagagaccctTTCTTTGCCCTGACTGTGGAAAAAGATTTCTGTCCTCTGGTGAATTGTCAAAACACCTTCAGTGTCACTCAGAGGAGAGACCCTTCCCTTGTCTCGAGTGTGGAAAGACTTTCAAGGCCAATCGGTTTTTAAAGAAACACTTACAGACTCATACAGGGGAGCGTCCTTTCCCCTGCTCACagtgtgggaagagattttcCAAGTCGACTGATCTGACCAGGCATAATCGCATGCATACAGGGGAGAGGCCACATATGTGCTCTCAGTGCGGTAAAAGTTTCTTAACTTACTCCGAAGTGGTGAAACATCAGCGTTACCACACTGGAGAACGACCATTCAAATGTGagcagtgtgggaagagttttacccAGTCCTGCTATCTTACAGTACATAagcgcatacacacaggagagaagccctacTCCTGCAGCGTGTGTGGAAATCGCTATAACAGCACCACTCCACTGAAGAGACACATGCTCAgccacacgggagagaagccatACGTGTGTACTGAATGTGGGAAGGCTTACAACAGATTGCATCTTCTGCGTACACACGAGCGAACTCATGCAGCAGTTGAGGCTGTTTGTTGAGGATATTGGTGTGTCATTGCTATTCATGTTGTTTTTTGGAATGTAAAGTAAGACAGGCCATTTGTATTAGAGGCCTGTAACAACAAGAGTTGAGCCTCATACTGTGAATTGTTAATTCTGTCACAGCTTGGAACTTGATTGTATATTTGAGATGTGCTTTTTGCTGCCAGGAATCATACATCAAAGGGTATATTCTTTTATTTAGATTACTCACCTTGTGTTGACATTAAAAAAGAGAGAAGTATTGCACACCTTCCTTTGCAGAATGAAGAGGACAGTTGCTACCGGTACACAGGCTGGTTGATGAGAGGCGAGTGCCAGGCCTCTACTCTTATGTTCAACAATGAGGGAAAATATTTATTCTCAAATGTAGGCTCGAGTGTTGTCTTTATGGCTGATATACATAATATGAATCAATCTGCTATCTCGGGTCAATAGACGATACAGTAATTCCTTTTCTAAGGGACACATGTTGGCTCATCAGCACCCCCAGAGGCAAAACTTCTATATCTTTAAAGGAGTATTCATTAGGCAATAAAGGTAATAAAAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1510298 lncRNA downstream 33805 70531587 ~ 70531883 (-) True G1323032
TU1510272 lncRNA downstream 63756 70499151 ~ 70501932 (-) True G1323010
TU1510267 lncRNA downstream 73947 70491511 ~ 70491741 (-) True G1323005
TU1510262 lncRNA downstream 78895 70486285 ~ 70486793 (-) True G1323000
TU1510261 lncRNA downstream 79550 70485623 ~ 70486138 (-) True G1322999
TU1510308 lncRNA upstream 10499 70582174 ~ 70583076 (-) True G1323042
TU1510334 lncRNA upstream 80383 70652058 ~ 70691752 (-) True G1323063
TU1510361 lncRNA upstream 126270 70697945 ~ 70698250 (-) True G1323082
TU1510362 lncRNA upstream 130372 70702047 ~ 70702459 (-) True G1323083
TU1510364 lncRNA upstream 133435 70705110 ~ 70705420 (-) True G1323085
XM_036945179.1 mRNA downstream 151 70558996 ~ 70565537 (-) False LOC110515225
XM_036945181.1 mRNA downstream 151 70558996 ~ 70565537 (-) False LOC110515225
XM_036945177.1 mRNA downstream 6937 70550588 ~ 70558751 (-) True si:dkey-14k9.3
XM_036945178.1 mRNA downstream 6939 70550588 ~ 70558749 (-) False si:dkey-14k9.3
XM_036945185.1 mRNA downstream 18270 70543376 ~ 70547418 (-) False LOC110490645
XM_036945171.1 mRNA upstream 2428 70574103 ~ 70580253 (-) False LOC110490800
XM_036945169.1 mRNA upstream 2430 70574105 ~ 70579786 (-) False LOC110490800
XM_036945170.1 mRNA upstream 2430 70574105 ~ 70579786 (-) False LOC110490800
XM_036945172.1 mRNA upstream 2430 70574105 ~ 70579786 (-) False LOC110490800
XM_036945173.1 mRNA upstream 2430 70574105 ~ 70579786 (-) False LOC110490800
TU1510280 other downstream 20468 70543356 ~ 70545220 (-) True LOC110490645
TU1510302 other downstream 28549 70536452 ~ 70537139 (-) True G1323036
TU1509441 other downstream 665985 69898685 ~ 69899703 (-) True G1322348
TU1509018 other downstream 1002648 69562310 ~ 69563040 (-) True G1321997
TU1508670 other downstream 1342660 69220303 ~ 69223028 (-) True G1321729
TU1510499 other upstream 453576 71025251 ~ 71039522 (-) True G1323207
TU1510608 other upstream 630825 71202500 ~ 71237846 (-) False G1323296
TU1510607 other upstream 631065 71202740 ~ 71237846 (-) True G1323296
TU1511211 other upstream 1285608 71857283 ~ 71922908 (-) True LOC118938840
TU1512018 other upstream 1476289 72047964 ~ 72050171 (-) False LOC110500989

Expression Profile