RNA id: XM_036945171.1


Basic Information

Item Value
RNA id XM_036945171.1
length 3933
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC110490800
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 70574103 ~ 70588541 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGTGTAGAGAATATGGGAATGGTCATTGATTATGGTGTGGGCTTTTTTCCAGTTTGCTGTTTGTGGAAGGAGCATGACAGGGGTAAATCCATCTAGTAGGTTACACatgaggagatggagaaagagggcaATCTCGATTTCAATGCACATCATGTGATCCACATAGTTTATGGTGTACTGTACATGGTTTCAAAGTCATCTTTTTAGGCTGTGTTTTATTGTTGCACATTGTTGACCCTCACATTTAGGGACACATTATTGAGCCATGCCAGACTCTGGGATTTACACACTTGCAGgtccccctcttcttcttccctctctgcGTCTCTTCATTCCACCACTGCGGCTTGTCTCTGCAGCCATGTGGCAAGTGGTTCAGCGAGGAGACGTTCAAGATTATGGGATGCTGGAGGAGTTTGTCACCACGGTGACAGACATTGTGCCAGAGCTTTTGAGTTGCAGTCAGAGGGCCCAACTCATTCTGGGGCTTCGAGCAAGGATGGTTCTGGAGTTGTGTCGCACTGAGCAGACAGCAGACCAAGACATTCAGCAACACCTGGCCAGGATCCGAAGCCTCATATCCACTGGAGAAGCAGAGTCAGGTGATGCTGAGGTGGAATTATCTGAATCAAAGTTTGTGGAGCTGGTTGAATCTCTGCTGAAAGACCCAAGTGAAAGGGAGAACTTCTACCAGGACGTCTTCCCTGTGGAATTTGGGCCCAAGTATGACACTGCAATACAGATGCTGATGTTAGAATTCCTTTCCAGACTTGAGAAGTTACTTCCCATACCAGACCTTGAACAGACTGCCTCCTTGTTAAATGCTGTCCCCTCTGCCCTGGAGAAATGTGTACAGTTTGTACCTGACCCCAAACAATTGAGGACCCTGCTCCAGTACCACAGAAAACGTGGACATTTGGATTCCATCGAAACTCCATCATCCTTTGGTGactacatcctctcctctctgtctctccctccacatgTACGTGTGGTGACTGCCACAGAAGTAGATTCACAATCAGAATGTTTGGCTAGAGTGGAAGGAAAAGGGTTGGTGGAGGGTACAATAGAGAAAAATGGAGGACTACTTgcaccagatgaagatcaaagAGACGCATTTACTGAGAAGGAGCTTGCTATGAATAGGAAGCCTGTAAGTGTGGAAACGGACAATCAAGCTGTCACCGGAATTCATGTTCAAACCTCAAAACAAAGCAAGAGGCTGCAGATCAAGAAAATACGGTCAAAAGTACAAAAACCATGTAAAACGGATTCTTCCGAGCGGGCAATCCAACAGCCATCCTCCTCCAAGGTGCACACCTCCCTGAGGAAGTCATGCAAAAGAGGCCCGTTCAGGAAGACATGCCCCGACTGTGGGAGGACTTTTGCTCGTGCCACGTCCTTTAGAAGGCACCAGCGAAGCCACACTCAAGATCATGATCATAGGTTTAAGTGCCTCAAATGTGCAATAGGCTTCAAGGATCTTTATGATCTGAAGAGACACCAGCAAGGAGTTTGTGAAAATAACCTCTCAACTTTGGTTGATTGGGAAAATAAAGAAGAGATCCCACAACCCTCAACTAGCAAATCTCCGAACACATCACCCCTTAAGACGCTCTCTCCATCAGGGCTAACACAGAAAAGACCTCTGGACACCAAAACATGCTCTTTGTGTAGGAGGTTTTTCACTCGTACTTCAGACATGGCCAGGCACATGAGATCCCACTCAAAAGAGCATCCATTTTGGTGTGTAAATTGTGATAAGAGATTCAAGTATTCATATGatttgaagaggcaccagagagaTTTGTGTAAGAAAGTGAACCAGGAAGATTTAGGTCAGGTTGGTCAAAACTTGTCACAACAGAAGGGGAAACCGCAGCCAGAGAAAGATGAATCCCAATCAATGGGTAGCACTGGGTCTCTTGGCACTGATGAAAACCCGCAACCATCTCACAAAGGGCTGTCCGACTCAAAAACCTGTTGTGTCTGTGGTAGGATTTTGACTCGTACCTCAGACATGGAAAGGCACTTGAAATCTCACTCAAAGGAGCGTCCCTTTCATTGTGCTATTTGTGAGAGAAGTTTTAAGTACAAAGATACCTTGAAGAAACATCAGGAAATCCTTGGCCACGAGGGCATCCTAGAAGACTTGGGTCAGAGTGTGGACCAGCAACAAGCGGAAGTTAAAACCGAAGGTTGCAGCAGTCCTCTCACTACCAAGGAAAACGACACTGGGACCCTCATCACAGCTGCTACTTCAGTGCCGACTCTCAAAGAACCCAAACCATGCACTGTGTGTGGGAAGATTTTTAACCGTGCTTCAGGAATGGCTATTCATATGAGATCCCATTCAGATGAGCGTCCTTATCAATGTGGCAATTGTGAACAGCGCTTCAAGTACATGCATGGTTTAAAGAAACACCAGAGGGATATCTGTCTGAAGGTGAACCAAGAAGAAGCATCTAAGTTGGTGGACCAGCAACAAGAGGATGCTactccagaggaggctggtgaacTGCTAGCCACTGATGACACAAGGGCAGAATGCAAGGAGGAAGAAAGAAAGGTGGTATTCAAATGTGATGAATGCGACAAGGAATTCAAAGGCTCATCCTCCCTAAGAACACACAAACGAATTCACAATCCATTCTATTGCTCTGATTGTGGAAGGATATACCCAAACTCCATTGCCTTTGACAGACACAAGCTGATGCACAAAGAAATCCAGTGTACCATGTGTGAGAAGACCTTTACCCTGTTGGGGCGTCTGAGAGAACATTATCTGCATCAACATAAATTCACAGGACCATACCCCTGCTCTCAATGTGAGAAAACCTTCACTCAGTTATCGTACCTTGTCATCCATGAGAGGGTTCACTCGGGAGAGTACCTGTACCAGTGTTCTGTTTGTCCAGAAAAATTCAGAACAGCCAATTCTCTAACAATACACAGTAGGAagcacacaggagaaaagccgtTCCTGTGCTGGCAATGTGGAAAGAGCTACAGGGCCGCTTCTGAACTGTCGGTGCATATGGGGACTCACTCAGAGGAGAAACCCTTTTCTTGTTCGCAGTGTGACATGACTTATCGGACAAAGATTCAGCTGAATACACACATTGATCAAGTTCACGAGGGGGTGAGATTTACCTGTACAGTCTGTGGAAAGCAGTTTTACAAAGCAGTGTCATTAAAAAGACACGAACTCACTCACACAGGAGAAAGACCATTTCCATGCTCCTATTGCGAAAAAACCTTCATCACAGCAAATGAAAGGAGGTTGCATGAAAGATACCATACTGGTGAGAGACCATACAAATGTCAAGACTGTGGAAAGTCCTTCATCCAGTCAGGTTACCTGAAATCACACCAACGacttcacacaggagagaagccatttTCATGCAGCGTTTGTGACAAACGTTTCAGATTTTCTCATCATATGAAAAGGCACCAGAAAACCCATACAGAGAAGCATGTATGTGGGGAATGTGGGGAATCTTTCACCCAAATTCGATGCCTCAAGGCTCACcaactcactcactccctcaatGAAAATTGAGTTACTGTTGTACATTTGCATATCAGttgttgaatgtttttttttatttttcttttgGATAGATTTAATAACTAGGTCCGTCAGATTAGTTAAGTGGATATTTTGAATAGATCATCTAAAATGTTGTGTAGAGTCGGCTGCAAGTATTGATTGTAAGTCATTTGTAAAGAGAATCTAAATGACCAATGGGCAACTGAATTTACTTGATGGACAAATCCAcccaaaaacatatattttggtatttgtttcattagtccattgttgacgtacagtgcatttgaaaagtatttagaccccttgacattttgttacattacagctttatttaaaaaaaatgtttttccccctctaatctaaacacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1510298 lncRNA downstream 42220 70531587 ~ 70531883 (-) True G1323032
TU1510272 lncRNA downstream 72171 70499151 ~ 70501932 (-) True G1323010
TU1510267 lncRNA downstream 82362 70491511 ~ 70491741 (-) True G1323005
TU1510262 lncRNA downstream 87310 70486285 ~ 70486793 (-) True G1323000
TU1510261 lncRNA downstream 87965 70485623 ~ 70486138 (-) True G1322999
TU1510308 lncRNA upstream 1921 70582174 ~ 70583076 (-) True G1323042
TU1510334 lncRNA upstream 71805 70652058 ~ 70691752 (-) True G1323063
TU1510361 lncRNA upstream 117692 70697945 ~ 70698250 (-) True G1323082
TU1510362 lncRNA upstream 121794 70702047 ~ 70702459 (-) True G1323083
TU1510364 lncRNA upstream 124857 70705110 ~ 70705420 (-) True G1323085
XM_036945175.1 mRNA downstream 2405 70565688 ~ 70571698 (-) True LOC110490632
XM_021564098.2 mRNA downstream 2427 70565688 ~ 70571676 (-) False LOC110490632
XM_021564097.2 mRNA downstream 2428 70565688 ~ 70571675 (-) False LOC110490632
XM_036945176.1 mRNA downstream 2789 70565688 ~ 70571314 (-) False LOC110490632
XM_036945180.1 mRNA downstream 8055 70558996 ~ 70566048 (-) False LOC110515225
XM_036945168.1 mRNA upstream 3005 70583258 ~ 70592677 (-) True LOC110490634
XM_036945167.1 mRNA upstream 12863 70593116 ~ 70606148 (-) False LOC110490633
XM_036945166.1 mRNA upstream 12863 70593116 ~ 70606149 (-) True LOC110490633
XM_036945190.1 mRNA upstream 63911 70644164 ~ 70649036 (-) True LOC118938838
XM_036945195.1 mRNA upstream 153109 70733362 ~ 70755356 (-) False LOC118936248
TU1510280 other downstream 28883 70543356 ~ 70545220 (-) True LOC110490645
TU1510302 other downstream 36964 70536452 ~ 70537139 (-) True G1323036
TU1509441 other downstream 674400 69898685 ~ 69899703 (-) True G1322348
TU1509018 other downstream 1011063 69562310 ~ 69563040 (-) True G1321997
TU1508670 other downstream 1351075 69220303 ~ 69223028 (-) True G1321729
TU1510499 other upstream 444998 71025251 ~ 71039522 (-) True G1323207
TU1510608 other upstream 622247 71202500 ~ 71237846 (-) False G1323296
TU1510607 other upstream 622487 71202740 ~ 71237846 (-) True G1323296
TU1511211 other upstream 1277030 71857283 ~ 71922908 (-) True LOC118938840
TU1512018 other upstream 1467711 72047964 ~ 72050171 (-) False LOC110500989

Expression Profile