RNA id: XM_036945166.1


Basic Information

Item Value
RNA id XM_036945166.1
length 3970
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC110490633
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 70593116 ~ 70606149 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTATCTGAGTTTAattttgaaaaacaagaaaacccGGAAACTGATTAAAACAACTTCCGTTTCTCACTGCCTGAATGGTATGTGGAGAGAACGGCAACTCTAGACCGGGAAGTGGGGCATCTAAAtcaaatctagctagctaacttttttCAAGTATACCTTAGCTTCCTGTTGACTATTGTATGAGGCCGAGATGCAAAGTCAGGATCCATGCGAAAATTgtccccctcttcttcttccctctctgcGTCTTTTCATTCCACCACTGCGGCTTGTCTCTGCAGCCATGTGGCAAGTGGTTCAACGAGGAGACGTTCAAGATTATGGGATGCTGGAGGAGTTTGTCACCATGGTTACAGAGATTGTGCCAGAGCTTTTGAGTTGCAGTCAGAGGGCCCAACTCATTCTGGGGCTTCGAGCAAGGCTGGTTCTGGAGTTGTGTCGCACTGAGCAGACATTAGACCTCATGAATATTCAAAAACACCTGGACAGGATCCGATCCCTCACATCCACTGAGGAAGCAGAGGTGGAATTATCTGAATCAAAGTTTGTGGAGCTGGTTAAATCTCTGCTGAAAGACCCAAGTGAAAGGGAGAACTTCTACCAGAACGTGTTCCCTGTGGAATTTGGGCCCAAGTATGACACTGCAATACAGATGCTGATGTTAGAATTCCTTTCCAGACTTGAGAAGTTACTTCCCATACCAGACCTTGAACAGACTGCTACCTTGTTAAGTGCTGTCCCCTCTGCCCTGGAGAAATGTGTGCAGTTTGTACCTGACCCCATACAATTGAGGACCCTGCTCCAGTACCACAGAAAACTTGGACATTTGGACTCCATCCGAACTCCATCATCCTTTGGTgacttcatcctctcctctctgtctcttcctccataCGTGCGAGTGGTGACTGCCCCACATGTAGACTCAGATACACAATCAGAAAGCATGAATTTGGAGGGAATGAAAGCAAGAGAGTTGTTGGAGAATCGGACAAAGGAAATCGATGTACTAGTCCCAGCAGATGAAGTTAGAAGATACATAATTACTGAGCCAGATTACGGTATGGACATGGAGTCTGCCGTTGGGGAAAATGACAATCAAGCTGTCACTGGCTTGAATTTACTCAGACCATCACAATTAAAACGAAGCAAAAGGCTGCAGATTAAGAACATGTTTCCAAAACGACGGAAACCTCGAAAGACCGATTCTTCCGGGCGTGCAAACAAACAGCCATCATCCTCCAAGGGTCGGCCTTCCCCAAAGAAGTCATGCAAAAAAGGCCCATTCAGTAAGACATGTGAAGTGTGTGGGAAGACATTCACTCGAGTCACAGCCATGAAAAGGCATCAGCTAACCCACACTGGAGATCTCAAGTTTAAGTGCCTCATGTGTGAAAAAAGCTTCAGGGATGGTCATAATCTGAAGAGACACCAGAGGCGAGTTTGTGAAAAGGAGATAAACATGTTGGATGAAGATGAAAATGAGGAAGAGATCCCACAACCCTCAACTAGCAAATCTCAGATCCCATCACTCCTCAAGACTCCCTGTCCACCAGGGCCATCTCATCAAGGAACTCTGGACACTATCACAGCCACTAACACATGCTCTGTGTGTGGGCGGTATTTTGCTCGTACTTCCAGCTTGGTAAGGCACATGAGCTCCCACTCAAAAGAGCGTCCATTTGGGTGTGTCAATTGTGATAAGAGATTCAAGTATTCGTACGATTTGAAAAAACACCAGAGAGAATTGTGTCAGAAAATGACCCAGGGAGATTTGTGTCAGGATGTTGGTCAGAACATGGCACAACAAAAGAGTGGCCTGGAACCAGAGAAGGTCTTTCTTGCCACTGCAGAGAATCAAACCCAGGTAGATTCCAAAACCTGTTATGTCTGTGGTAAGATTTTGACTTGTACCTCACAGATGGAAAGGCACTTGAAATCTCACTCAAAGGCACGTCCCTTTAATTGTGCTATTTGTGAGAGAAGTTTTAAGTACAAAGATACCTTGAAGAAACATCAGGAAATCCTTGGCCACGAGGGCATCCTAGAAGACTTGGGTCAGAGTGTGAACCAGCAAGAAGTGGAAGTTAACACAGAGAGTTGCATCAGCCCTCTCACTACCAAGGAAAACGACACTGAGCCCCTTATCACGGCTGCTACTTCAGTGCCGACTCTCAAAGAACCCAAACCATGCACTGTGTGTGGGAAGATTTTTAACCGTGCTTCAGTTATGGCTATTCATATGAGATCCCATTCAGATGAGCGTCCTTATCAATGTGGCAATTGTGAACAGCGCTTCAAGTACATGCACAATCTGAATCAACACCAGAGATATATCTGTAAGGTGAACCGAGAAGAGTCCTCTCAGATGGTAGACCAGCACCAAGAGGAGGAGTCTTGTGAACTGGTGGCTGTTAAGGCTGATACCCCAGAGACATCTACCAGTCGACTACAACTGGTTCACTGGTGTAAaaaatgtggaaagtgtttcgaTGACATCTGTAATTTGAAGCAACACCAGGAAAGTTCATGCAAAGAGGAAAAAATAAAGGTGGTCTTCCAATGTGAAAAAAGAAAGGTGGTCTTCAAATGTGATGATTGTGGGAAGGACTTCAAAGGTTCATCATCCCTAAGGACACACAAGCGAATTCACAACCCATTCTATTGCTCTGATTGTGGAAGGGTCCTCCCAAACTCCATTGCCTTTGACAGACACAAGCTGATGCAGCACAAGGAAATCCAGTGTACCATGTGTGAGAAGACCTTTACCCTGTTGGGGCGTCTGAGAGATCACTATCTGCATCAACATAAATTCACAGGACCATACCCCTGCTCTCAATGTGAGAAAACTTTTACCCAGTTAAGATACCTTGTTGAACATGAGAGGGTTCATTCAGGAGAGTACCCTTACCAGTGCTCTGTTTGTCAAGCAAAGTTCAATAAAGCAAATTCTCTAACAATACACAGTAGGAagcacacaggagaaaagccgtTCCTGTGCTGGCAATGTGGAAAGAGTTACAAGGATCGTGGAAACCTGTCAATGCATATGGGGACCCACTCAGAGGAGAGACCATTTTCTTGTTCGCAGTGTGACATGACTTATCGGACAAAGATTCAGCTGAATACACACATTGAACAAGTTCATGAGGGGGTGAGATACACCTGTGCAGTCTGTGGAAAGCAGTTTTTGAAAGCTGTGTCATTGATAAGACATGAACTCACTCACACAGGAGAAAGACCATGGCCATGCTCCTATTGCACAAAAACCTTCATCACTGCCAATGAAAGGAGATTGCATGAAAGATACCATACTGGTGAGAGACCATACAAATGCCAAGACTGTGGAAAGTCCTTCGTACAGTTATGTTTTCTGAAAGCACACCAACGacttcacacaggagagaagccatttGCATGCAGTGTTTGTGACAAACGTTTCAGATTAAATTACCATAGGCAAAGACACGAGCAAACCCATACAGGAAAACAGAAGCCACATGTTTGTGCGGAATGTGGGTTAGCTTTTGCTCAAAGAAAGCGCCTGACTGAACACCAATGCACTCACTCCTTGAattaattattatattttttttaagtctaATGTTCCTTTGCATTGTTATTCATTTTAAGACAGTACAGTGGGGAAAGTAGTGAGGGAGACAAATTAGGGGCACAGACAGAAAGAAGGGCAGAGAAGGGTCTTTTGAACCCTCGTCACCAAGTACCACTCTGTTAGACTCAGGCATTTGAGTTCTTGTTGTGtactaaaaataaaaacacaggtTTACACCTCAGGTTTGAATTAATATTCTATTTTTCAGCTTTGTTTCATAATTCTGTGGATAATTTCCATTGCTAATTTGTAGTATGTATAGTAAAGGAGAACGTGTAAACTGTTATTCTCAAATAACCACAACATTGCATTTTGTGATCATGGCAATAATAAAGGAGGACATGAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1510308 lncRNA downstream 10040 70582174 ~ 70583076 (-) True G1323042
TU1510298 lncRNA downstream 61233 70531587 ~ 70531883 (-) True G1323032
TU1510272 lncRNA downstream 91184 70499151 ~ 70501932 (-) True G1323010
TU1510267 lncRNA downstream 101375 70491511 ~ 70491741 (-) True G1323005
TU1510262 lncRNA downstream 106323 70486285 ~ 70486793 (-) True G1323000
TU1510334 lncRNA upstream 45909 70652058 ~ 70691752 (-) True G1323063
TU1510361 lncRNA upstream 91796 70697945 ~ 70698250 (-) True G1323082
TU1510362 lncRNA upstream 95898 70702047 ~ 70702459 (-) True G1323083
TU1510364 lncRNA upstream 98961 70705110 ~ 70705420 (-) True G1323085
TU1510367 lncRNA upstream 106819 70712968 ~ 70713236 (-) True G1323088
XM_036945168.1 mRNA downstream 439 70583258 ~ 70592677 (-) True LOC110490634
XM_036945174.1 mRNA downstream 4575 70574105 ~ 70588541 (-) True LOC110490800
XM_036945170.1 mRNA downstream 13330 70574105 ~ 70579786 (-) False LOC110490800
XM_036945190.1 mRNA upstream 38015 70644164 ~ 70649036 (-) True LOC118938838
XM_036945195.1 mRNA upstream 127213 70733362 ~ 70755356 (-) False LOC118936248
XM_036945196.1 mRNA upstream 127213 70733362 ~ 70755356 (-) False LOC118936248
XM_036945194.1 mRNA upstream 128033 70734182 ~ 70755355 (-) False LOC118936248
XM_021564110.2 mRNA upstream 156828 70762977 ~ 70775712 (-) False LOC110490643
TU1510280 other downstream 47896 70543356 ~ 70545220 (-) True LOC110490645
TU1510302 other downstream 55977 70536452 ~ 70537139 (-) True G1323036
TU1509441 other downstream 693413 69898685 ~ 69899703 (-) True G1322348
TU1509018 other downstream 1030076 69562310 ~ 69563040 (-) True G1321997
TU1508670 other downstream 1370088 69220303 ~ 69223028 (-) True G1321729
TU1510499 other upstream 419102 71025251 ~ 71039522 (-) True G1323207
TU1510608 other upstream 596351 71202500 ~ 71237846 (-) False G1323296
TU1510607 other upstream 596591 71202740 ~ 71237846 (-) True G1323296
TU1511211 other upstream 1251134 71857283 ~ 71922908 (-) True LOC118938840
TU1512018 other upstream 1441815 72047964 ~ 72050171 (-) False LOC110500989

Expression Profile