RNA id: XM_036945195.1


Basic Information

Item Value
RNA id XM_036945195.1
length 2551
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC118936248
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 70733362 ~ 70755356 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACCAGATAATCGAATCCCCTCATTGAAGCGCAATCATCGTTTTCTTGACATTGCCAGTTAACCTGTTACCAGAGTAAATTCAATAAATAGTTCAACTGAAATTGTTACTATGGCATCAAAATGAATCGTTGTTGAAATTACCTCCGAGTAAAGCTAGCAGGTCTTACGCCTCTTTTTTACTGTGCACATGTAACATTTCCTTCACACAGTTTAAGCCGTAGTAGGTCATGTAAATTAGGtacgtagctagctagttacagtgACTGCTATCCATCGCTACCGCTACAAGACTATTGCCTGCCCACCCGGCTACTGATCCTTTCAATGGCCGCTGCAAAAAAACGTACGCAATCGGACATCGAAGATGTGAGAGACAGAAAAGCAAAGGTTATTAAAGACAGCGGTGAGAAGAGACACATCGCAGCCCTGATCCTGGCGAGGGGAGGCAGTAAGGGGATCCCCCTGAAAAATATCAAAGTTCTCGCCGGTGTCCCCCTCATTGGATGGGTTCTGAGAGCTGCAGTGGACTCCAAACAGTTTGACAGTGTGTGGGTATCAACTGACCATGATGACATTGAGAAGGTAGCCAAGACATGGGGAGCTCAGGTTCACCGCAGGAGCCCAGAGGTGTCCAAAGACTCCTCCAGCTCTCTTGACACCATCCAGGAATTTGCCAGATTAAACCCAGAGGTGGATGTGATCTGTCACATCCAGGCCACGTCTCCCTGCCTGCACCCCTTCCACCTGAAGGAGGCCCTGGAGATGATCACCAAGCAGGGCTTCACGTCCGTCTTCTCCGTGGTCCGACGACACCACTTCCGCTGGCAGGAGGTGAAGAAAGGAGgTAGTGTAGCCACCCAGCCTCTGAACTTAGACCCGTGTAACAGGCCCCGGAGACAGGACTGGGATGGAGAGCTGTGTGAGAACGGATCTTTCTACATTTATACCAGAGCGACGATAGAGAGAGGCCTGCAGGGGGGGAAGTGGGCTTACTATGAGATGCTGCCAGAGTACAGTGTGGATATTGATGTGGATATCGACTGGCCCGTGGCAGAACAGAGAGTACTGAGGTTTGGTTACTTTGGCCTGGACAAGCCTGAGGTGGTGCGTCTGCTGCTGTGTAACGTCTCCGGCTGTCTGACTGACGGCCGCgtcctcatctctgtctctggAGAGGAGATGGTCTCAGTCAACACCAGAGATACTATGGGTATCCGcatgctgcagagagagggagtggagGTGATCCTGATCTCATCTAGTGAGGacctcctgaccaaggccctggcTGACAATCTATCCCAGAGGACAGGCTGCGAGGTCAGGCAGCTGGGCAAGGACATCCAGGGTGAGGTCACAGCCATGATGGATGACAAGGATCTGGACTGGAAGGAGGTCGCCTATATGGGTAATGATGCACCAGATGTTGACTGTCTGAACCTGGCTGGGCTGAGTGCAGTTCCCCGGGACGCCCCAGTGGTGGCGATCAACGCTGCTAAATACTCCTGCCACAGTGCTGCAGGCCTGGGGGCTGTGAGGGAGTTTTCTGAACACATCCTGCTGCTCAAGAAGAAGGCCAAGTCTCAGATGGAACAGGACCGCATCCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACAGAGATCCATTCTTAACTGTAGAATGTGTTCTAAAGTAGGCATGGGCAAACTTTTTTGCTTGAGGGCCAAACAGATTTTTTGGGGATTGATTTGTTTGTCCAAATCCATTTCTGGGCCAGAAAAAGTGCAGATATTTTAAAATAcataggtccattataatttctacatCCTTTCTATCTAGTTCATGACCTGGAGTGTTTTTTTTaccaaaaataataatttcctGCCAAAAAACACTAAACTTCACATGTAAACTGGAAGAGTTGCattctcaattgcatactcctcgcaCCCACTCTCCCcgtctccttctcttccctctgaccttctccttcAATGGTttttgagaaggagacaaggACTCGAGGAATATGCAATTGAGAACATCCCCTTGTCATTCATTGTCATGTAAAAAAAGGAGTTGTCAAGAGAGCAGTAACAGACTGACACTCAGGATATTGTATTCTAAACTGCATTCTATCAATCAGACAAACCCTCTGAACTCATGCCTGGGCCAAACATTAGGCAAAGTGACAATAAAGGTTATTGAcatctctctactttctctggaGTTCTAGAAAGAAGCATATTTACTCACTTTCATGCACTTGGCTCAGGCTGAAATGTGTTTTACAGGTTGTCAGGTCAGTGTAGTTTGTGTTTTTATATTACTACAGGTTGTGTTGACAAAtacagtcagtactttttaattgtcttagttttaatgaaatgaagtatatacactgagtgtacaaaacattatgaacacctgctctctctttgacatagactgaccaggtgaatgctatgatcccttaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1510381 lncRNA downstream 83 70731008 ~ 70733279 (-) True G1323101
TU1510373 lncRNA downstream 4085 70728898 ~ 70729277 (-) True G1323094
TU1510370 lncRNA downstream 15289 70717610 ~ 70718073 (-) True G1323091
TU1510369 lncRNA downstream 16940 70715989 ~ 70716422 (-) True G1323090
TU1510368 lncRNA downstream 18897 70713725 ~ 70714465 (-) True G1323089
TU1510380 lncRNA upstream 20408 70775764 ~ 70776821 (-) True LOC110490643
TU1510347 lncRNA upstream 21475 70776831 ~ 70848012 (-) True LOC118938960
TU1510411 lncRNA upstream 98198 70853554 ~ 70853785 (-) True G1323130
TU1510422 lncRNA upstream 120019 70875375 ~ 70875577 (-) True G1323137
TU1510428 lncRNA upstream 121442 70876798 ~ 70877602 (-) True G1323138
XM_036945190.1 mRNA downstream 84326 70644164 ~ 70649036 (-) True LOC118938838
XM_036945166.1 mRNA downstream 127213 70593116 ~ 70606149 (-) True LOC110490633
XM_036945167.1 mRNA downstream 127214 70593116 ~ 70606148 (-) False LOC110490633
XM_036945168.1 mRNA downstream 140685 70583258 ~ 70592677 (-) True LOC110490634
XM_036945174.1 mRNA downstream 144821 70574105 ~ 70588541 (-) True LOC110490800
XM_021564110.2 mRNA upstream 7621 70762977 ~ 70775712 (-) False LOC110490643
XM_036945191.1 mRNA upstream 7621 70762977 ~ 70776163 (-) False LOC110490643
XM_036945192.1 mRNA upstream 7621 70762977 ~ 70776168 (-) False LOC110490643
XM_036945193.1 mRNA upstream 7621 70762977 ~ 70776168 (-) False LOC110490643
XR_005036354.1 mRNA upstream 21933 70777289 ~ 70777429 (-) False LOC118938960
TU1510280 other downstream 188142 70543356 ~ 70545220 (-) True LOC110490645
TU1510302 other downstream 196223 70536452 ~ 70537139 (-) True G1323036
TU1509441 other downstream 833659 69898685 ~ 69899703 (-) True G1322348
TU1509018 other downstream 1170322 69562310 ~ 69563040 (-) True G1321997
TU1508670 other downstream 1510334 69220303 ~ 69223028 (-) True G1321729
TU1510499 other upstream 269895 71025251 ~ 71039522 (-) True G1323207
TU1510608 other upstream 447144 71202500 ~ 71237846 (-) False G1323296
TU1510607 other upstream 447384 71202740 ~ 71237846 (-) True G1323296
TU1511211 other upstream 1101927 71857283 ~ 71922908 (-) True LOC118938840
TU1512018 other upstream 1292608 72047964 ~ 72050171 (-) False LOC110500989

Expression Profile