RNA id: XM_036945193.1


Basic Information

Item Value
RNA id XM_036945193.1
length 1767
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC110490643
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 70762977 ~ 70776821 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaGCATTTCCATACAATTGTGTCGAAAAATAGGTTAATTACACGAGGCTTTGATCAAAATAGTGTACACTAGTGGCACCTGCTGGTCAAAATAAGCCTTTTCCTATTCTACCGAAACGAATACCAGACGGTTATTCGacaaacttgaaaataaaagagagccgcacactccaggagctcagatgcaaacatttaattaccaacgtttcgacggTGGTTATTCGACAAAACACATCTTTGGAGGTCATTGATAACGTGTTTCCGATAAAGCGATACAATATCGGCACACTGCTTAACGATTTCGATGCATGACTCCGAGCTCCCGGTATCAGACAAAACGAACGCGATCAGGCATCGAAGATGTGAGAGACAGAAAAGCAAAGGTTATTAAAGACAGCGGTGAGAAGAGACACATCGCAGCCCTGATCCTGGCGAGGGGAGGCAGTAAGGGGATCCCCCTGAAGAATATCAAAATGCTAGCCGGTGTCCCACTCATCGGATGGGTTCTGAGAGCTGCAGTGGACTCCAAACAGTTTGACAGTGTGTGGGTATCAACTGACCATGATGACATTGAGAAGGTAGCCACGGCATGGGGAGCTCAGGTTCACCGCAGGAGCCCAGAGGTGTCCAAAGACTCCTCCAGCTCTCTTGACACCATCCAGGAATTCGCCCGATTAAACCCAGAGGTGGATGTGATCTGTCACATCCAGGCCACGTCTCCCTGCCTGCACCCCTTCCACCTGAAGGAGGCCCTGGAGATGATCACCAAGCAGGGCTTCACGTCCGTCTTCTCCGTGGTCCGACGACACCACTTCCGCTGGCAGGAGGTGAAGAAAGGAGgTAGTGTAGCCACCCAGCCTCTCAACCTGGATCCATCCAACAGGCCCCGGAGACAGGACTGGGATGGAGAGCTGTGTGAGAACGGATCTTTCTATTTTTCCACCAGAGCCCTTATAGAGGAAGGTGTTTTGCAGGGGGGGAAGTGGGCTTACTATGAGATGCTGCCAGAGTACAGTGTGGATATTGATGTGGATATCGACTGGCCCGTGGCAGAACAGAGAGTACTGAGGTTTGGTTACTTTGGCCTGGACAAGCCTGAGGTGGTGCGTCTGCTGCTGTGTAACGTCTCCGGCTGTCTGACTGACGGCCGCgtcctcatctctgtctctggAGAGGAGATGGTCTCAGTCAACACCAGAGATACTATGGGTATCCGcatgctgcagagagagggggtggagGTGATCTTGATCTCGTCCGGTGAGGACCCTGTGACCAAGGCCCTGGCTGACAATCTATCCCAGAGGACAGGCTGCGAGGTCAGGCAGCTGGGCAAAGACATCCAGGGTGAGGTCAAAGCCATGATGGATGACAAGGATCTGGACTGGAAGGAGGTCGCCTATATGGGTAATGATGCACCAGATGTTGACTGTCTGAACCTGGCTGGGCTGAGTGCAGTACCCCGGGACGCCCCAGTGGTGGCGATCAACGCTGCTAAATACTCCTGCCACAGTGCTGCAGGCCTGGGGGCTGTGAGGGAGTTTTCTGAACACATCCTGCTGCTCAAGAAGAAGGCCAAGTCTCAGATGGAACAGGACCGCATCCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACATAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1510378 lncRNA downstream 7984 70752185 ~ 70754993 (-) True LOC118936248
TU1510381 lncRNA downstream 29698 70731008 ~ 70733279 (-) True G1323101
TU1510373 lncRNA downstream 33700 70728898 ~ 70729277 (-) True G1323094
TU1510370 lncRNA downstream 44904 70717610 ~ 70718073 (-) True G1323091
TU1510369 lncRNA downstream 46555 70715989 ~ 70716422 (-) True G1323090
TU1510347 lncRNA upstream 663 70776831 ~ 70848012 (-) True LOC118938960
TU1510411 lncRNA upstream 77386 70853554 ~ 70853785 (-) True G1323130
TU1510422 lncRNA upstream 99207 70875375 ~ 70875577 (-) True G1323137
TU1510428 lncRNA upstream 100630 70876798 ~ 70877602 (-) True G1323138
TU1510441 lncRNA upstream 121233 70897401 ~ 70898052 (-) True G1323151
XM_036945195.1 mRNA downstream 7621 70733362 ~ 70755356 (-) False LOC118936248
XM_036945196.1 mRNA downstream 7621 70733362 ~ 70755356 (-) False LOC118936248
XM_036945194.1 mRNA downstream 7622 70734182 ~ 70755355 (-) False LOC118936248
XM_036945190.1 mRNA downstream 113941 70644164 ~ 70649036 (-) True LOC118938838
XM_036945166.1 mRNA downstream 156828 70593116 ~ 70606149 (-) True LOC110490633
XR_005036354.1 mRNA upstream 1121 70777289 ~ 70777429 (-) False LOC118938960
XM_036945197.1 mRNA upstream 5527 70781695 ~ 70787736 (-) True LOC110490694
XM_036945199.1 mRNA upstream 14866 70791034 ~ 70859488 (-) False LOC110516361
XM_036945205.1 mRNA upstream 14866 70791034 ~ 70859488 (-) False LOC110516361
XM_036945202.1 mRNA upstream 16322 70792490 ~ 70858093 (-) False LOC110516361
TU1510280 other downstream 217757 70543356 ~ 70545220 (-) True LOC110490645
TU1510302 other downstream 225838 70536452 ~ 70537139 (-) True G1323036
TU1509441 other downstream 863274 69898685 ~ 69899703 (-) True G1322348
TU1509018 other downstream 1199937 69562310 ~ 69563040 (-) True G1321997
TU1508670 other downstream 1539949 69220303 ~ 69223028 (-) True G1321729
TU1510499 other upstream 249083 71025251 ~ 71039522 (-) True G1323207
TU1510608 other upstream 426332 71202500 ~ 71237846 (-) False G1323296
TU1510607 other upstream 426572 71202740 ~ 71237846 (-) True G1323296
TU1511211 other upstream 1081115 71857283 ~ 71922908 (-) True LOC118938840
TU1512018 other upstream 1271796 72047964 ~ 72050171 (-) False LOC110500989