RNA id: XM_036945197.1


Basic Information

Item Value
RNA id XM_036945197.1
length 2135
RNA type mRNA
GC content 0.52
exon number 3
gene id LOC110490694
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 70781695 ~ 70787736 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAGTGCATTGCATCCCGCCCATAGAGCGGAGCAGCTACGTCAAGAGAATTTGGGATGCGCCCTGGGTCTGTGACTGCCTGGAAACTCTCACCCGTCAGTACAACTTTTTGGAAGTGGCGCTGGAGCTACCAACCTTAATGTGATAGAAGTTAATTGAAATCAAATCGATGAAAAACTTTGCAAAATAATAGGAATTTATCCAACTTTGAATCATGTTTTACGCAAGCTGACAGGAGAATTACGCACGACTAAAAAACACTTCGGTTTACTGAAACCCTCCGACTTTTTTCCTCTATTGCAAATGCAGTAAGGATGTTGGCGAGAAAAAGCATCATCCCGGAGGAGTTCTCCCTACCGGGGCTTGCTTCGAGGGTCCACCGCAAACCAGTGTTCAGGGACCGGGTGAACAAAGCCCGCTTCATCGCCAAGAGCGGATCCTGCAACTTGGCGCACAAGAACATCCGAGAACAGGGAAGATTCTTGCAAGACGTCTTCACCACTCTGGTGGACCTGAAATGGCGCTTCACCCTGGTCATCTTCACCATGACTTTTCTGTGCAGTTGGCTCCTCTTCGCCATGTGCTGGTGGCTCGTGGCCTTTGCCCATGGAGACCTTGTACCCAACCGCACGTCTGGCATTGAGCAGTGCGTCACCAACGTCAAGTCATTCACCTCAGCCTTCCTGTTCTCCATCGAGGTCCAGGTGACCATCGGCTTTGGCCACCGTATGATCACAGAGCAGTGCCCCACGGCCATCGCCGTCCTCATCTTCCAGAACATTGCTGGCCTCATCATCAACGCCATTATGCTGGGGTGCATCTTCATGAAGACAGCCCAGTCGCACCGCCGCGCCGAGACACTCATCTTCAGCCGCAACGCCGTCATCGCCGTGCGCAACAATCGCCTCTGCTTCATGACCCGTGTGGGCGACCTCCGCAAGTCCATGATCATTGGCGCTGCCGTCCGCCTCCAGGTGGTACGCAAGACCACCACCCCCGAAGGCGAGGTCATCCCTATCCATCAGATCGACGTGCAAACGGAGAGCGCCGCGGCGAGTAACTCCATCTTCCTCTTGGCGCCACTCATTATCTGCCATACCATCAATAAGGACAGTCCGCTGTACGACCTGTCGGCCATGGAGCTGCAGTGCAGCGACCTGGAGGTGATTGTGATCTTGGAGGGCGTGGTGGAGACCACGGGCATCACCACCCAGGCCCGGACCTCCTACGTCACCGAGGAGATCCAGTGGGGTCACCGCTTCGTGCCCATCGTGACCGAGGAGGACGGGGTGTACTCGGTGGACTACTCCAAGTTTGGGAACACGGTCAAGGTGGCGACGCCGAGGTGTTCGGCCCGCGAGCTGGACGAGAAGCCCTCCATACTCATCCAGACGCTGCAGAAGAGCGAGCTGAGCCACCAGAACTCACTGAGGAAGAGGAACTCAATGAGGCGGAACAACTCCATGAGGAACGGCGGCGGGAGCTCCGGCACCATGCGGAGGAACAACTCGGCCCTCACCGTGCCCAAAGTGCAGTTCCTCACCCCTGAGGCGGTGGGCCAGAACGTGGCCGTCACATGACACGAGGCCTGGCTCCCATTGGCTGTCCTGCTCTTCCTGGGTGGGACCTCCCATGTTTATCCTCTGGCTCAGTTAGAGCTGACTCTGGTCCTGTTCCCCACACTCTGCCACATATACAGTAGTCAATGCTATACCTGACACACACAATGCCCTGTTATAACTATTGTTGTGAGGATGGATTTAACCGGTTTTAGTTACATATTAGTGTCTCATTTTCAGTCTGGTTCTTTCCAAGTGCCTTTGCCTTTGTCTGGTTCTAAGCTGTAATAGGCATCCACAAGTTGTACTTTATGATGTACATGCCTTTAAACATGTAGTAACTCTTTATATAGCTTTGTACTGAATTCTGTACTCATCACTGAATCCATGTGATGATTTAATTTGCTCTTTAATGTTACTGTGACCAAAGAACATATTATTACAGATGATAATGGCCAACTCCTTTCTGATAGTAGAAGAAAATGATGTTTTGATATCAGCTGCAACGTATTACACACCAACCGGGTTCCTCATTCTTATCAGAACCTTTAATAAAGCATTTACTTCAGTACTGTA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015272 ATP-activated inward rectifier potassium channel activity molecular_function

KEGG:

id description
K05001 KCNJ8, KIR6.1; potassium inwardly-rectifying channel subfamily J member 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1510380 lncRNA downstream 4874 70775764 ~ 70776821 (-) True LOC110490643
TU1510378 lncRNA downstream 26702 70752185 ~ 70754993 (-) True LOC118936248
TU1510381 lncRNA downstream 48416 70731008 ~ 70733279 (-) True G1323101
TU1510373 lncRNA downstream 52418 70728898 ~ 70729277 (-) True G1323094
TU1510370 lncRNA downstream 63622 70717610 ~ 70718073 (-) True G1323091
TU1510411 lncRNA upstream 65818 70853554 ~ 70853785 (-) True G1323130
TU1510422 lncRNA upstream 87639 70875375 ~ 70875577 (-) True G1323137
TU1510428 lncRNA upstream 89062 70876798 ~ 70877602 (-) True G1323138
TU1510441 lncRNA upstream 109665 70897401 ~ 70898052 (-) True G1323151
TU1510457 lncRNA upstream 134999 70922735 ~ 70923376 (-) True G1323167
XR_005036354.1 mRNA downstream 4266 70777289 ~ 70777429 (-) False LOC118938960
XM_036945192.1 mRNA downstream 5527 70762977 ~ 70776168 (-) False LOC110490643
XM_036945193.1 mRNA downstream 5527 70762977 ~ 70776168 (-) False LOC110490643
XM_036945191.1 mRNA downstream 5532 70762977 ~ 70776163 (-) False LOC110490643
XM_021564110.2 mRNA downstream 5983 70762977 ~ 70775712 (-) False LOC110490643
XM_036945199.1 mRNA upstream 3298 70791034 ~ 70859488 (-) False LOC110516361
XM_036945205.1 mRNA upstream 3298 70791034 ~ 70859488 (-) False LOC110516361
XM_036945202.1 mRNA upstream 4754 70792490 ~ 70858093 (-) False LOC110516361
XM_036945201.1 mRNA upstream 4754 70792490 ~ 70859487 (-) False LOC110516361
XM_036945203.1 mRNA upstream 4754 70792490 ~ 70859487 (-) False LOC110516361
TU1510280 other downstream 236475 70543356 ~ 70545220 (-) True LOC110490645
TU1510302 other downstream 244556 70536452 ~ 70537139 (-) True G1323036
TU1509441 other downstream 881992 69898685 ~ 69899703 (-) True G1322348
TU1509018 other downstream 1218655 69562310 ~ 69563040 (-) True G1321997
TU1508670 other downstream 1558667 69220303 ~ 69223028 (-) True G1321729
TU1510499 other upstream 237515 71025251 ~ 71039522 (-) True G1323207
TU1510608 other upstream 414764 71202500 ~ 71237846 (-) False G1323296
TU1510607 other upstream 415004 71202740 ~ 71237846 (-) True G1323296
TU1511211 other upstream 1069547 71857283 ~ 71922908 (-) True LOC118938840
TU1512018 other upstream 1260228 72047964 ~ 72050171 (-) False LOC110500989

Expression Profile