RNA id: XM_036945199.1


Basic Information

Item Value
RNA id XM_036945199.1
length 6555
RNA type mRNA
GC content 0.51
exon number 41
gene id LOC110516361
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 70791034 ~ 70860332 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACCTTACCCCACCACATGGTTGGTGCTGGAACCTAGCGGCAAGGGAAGTTTGCCTCACCAGACTTGGTCAAGTTTTGAAATCCGATAGGGGGTAGCAGTATGGCCAGCCGATGCGCTGTAAGGCTAAAAATAACCACCTCCAATTTATGCTGTGTGGTTACTGTCTCCAAAAACCAGGCGACCTGAATGAAAGCGCGTCAATAAGGACACTTCTCTGAGGCTTCTCTGGACCAATAAGGTGGCATGGCTGGCCTGTCGTTCTGTGGCAACAATGTGACCAAGAATGCCTACAGTGTGGATACGGGGATGTTGAACAATGGCTGCTTCGTGGACGCCCTCAACCTGGTCCCTCACGTCTTCCTGCTGTTCATCACCTTCCCTATCCTCTTCATTGGCTGGGGCAGTCAGAGCTCTAAGGTTCAGATCCACCATAACACCTGGCTCCACTTCCCTGGACACAACCTGCGCTGGATCCTCACATTCACTCTGCTGTTTGTCCACGTCTGTGAGATCGCTGAGGGAATCGTCTCCAACAAACAGATGGACACCAATCACCTCCACCTCTTTATGCCAGCGTTTATGGGTTTCATAGCAGCCACTACATCTGTGGTGTACTACCACAACATAGAAACCTCCAACTTCCCCAAACTACTGCTGGCTCTGTTTATCTACTGGGTTCTGGCGTTCATCACCAAGTCCATCAAGCTGTGGAAGTTTGCAGAGTACGGCGTTGGAGTGTTGCACCTGAGGTTCTGTATCACAGCCCTGCTGGTCGTTCTGTACGGACTCCTCATGGCTGTAGAGATCAACGTCATCAGGGTCAGGAGGTACGTGTTCTTCGCCAACCCCCAGAAGGTAAAGCCTCCAGAGGACCTTCAGGACCTGGGAGTGAGGTTCCTCCAGCCCTTCGTCAACCTCCTCTCCAAGGCCACATACTGGTGGATGAACCCCCTGATTATAGGAGCCCATAAAAGACCCATTGAGCTGAAGAAGATTGGCAAACTCCCCATCGCCATGAGAGCCCTCACCAACTACCTGAAGCTCAAAGACGCCTACGAGGATCAGAGGCAGAATGCCGAGGACCCAGAGAAGGCTCCATCCATCTGGCGCTCTATGTACCGGGCGTTTGGCCGACCCATCCTCCTCAGCAGTACCTTCCGTTACCTGGCGGATCTGCTGGGCTTCGCCGGGCCGCTCTGCATCTATGGCATCGTCGAACATCTCAACAAAAAGCCCGTCAAGGAAGGGAGTGTGGTCCCCTATTTTGAGGTCTACTTCATGTCATCCAACGAGCTGCTCCAGAATACGTCAGTGCTGGCTGTTCTGCTGTTCCTGGCCCTGGTGCTACAGCGGACCTTCCTACAGGCCTCCTACTATGTCACCATAGAGACCGGCATCAACCTCCGTGGAGCCCTGCTGGCGATGATCTACAACAAGATCCTGCGTCTGTCCACCTCTAACATGTCCATGGGAGAGATGACCCTGGGCCAGATCAACAACCTGGTTGCCATAGAAACCAACCAGCTCATgtggttcctcttcctgtgtcccAACCTCTGGGCCATGCCAGTGCAGATTGTGATGGGCGTGATCTTGCTGTACTACCTGCTGGGGACCAGTGCTCTGATTGGAGCTTCGGTCATCGTGCTGCTGGCTCCAGTCCAATACCTGATCGCTACCAAGCTGGCTGACACCCAGAAGAGCACCCTGGACCAGTCTACGGAACGTCTGAAGAAAACCACAGAGATTCTGAAGGGGATCAAGCTGCTGAAGCTGTACGCCTGGGAGAACATCTTCTGTGACAGTGTAGAAGATACCAGGGGCAAAGAGCTCACCAGCCTCCGCACCTTCGCCCTCTACACCTCCATGTctaTTTTCATGAATGCTGCTATCCCCATCGCTGCTGTGCTTGTGACGTTTGTCAGCCACGCCCTGATCAACAAGTCCAAACCCAGCTCCTCAGAGGCCTTCGCTGCTCTGGCCCTCTTCCACATCCTGGTTACCCCACTGTTCCTGCTCTCCACCGTGGTCCGCTTCGCAGTCAAGGCCATGGTCAGCGTCCAGAAGCTGGGTGAGTTCCTGCAGAGCGATGAGATTGGCGATGACAGCTGGAGGAACGgagacatgtctgtgtccctaGAGGCCTGTAAGAAACACCCTGGGAcgaccaagGCTATAAACAGGAAGCAGCCCCTGCTCTACCAGATGGACAACTATGAGCAGCCAGCACGCAGACCACTGCGACCTAACGAGACTGAGGACGTGGCTGTCAAGGTGAACGGTGGATTCTTCACATGGGGAAGCAACTTGTCAACGTTGTCCGACATCAACATCTGCATTCCAACAGgtcagctgaccaTGATCGTGGGCCAGGTGGGTTGTGGGAAGTCGTCCCTGTTGCTGGCCATGCTGGGAGAGATGCAGACCCTCAGTGGAAAGGTCTACTGGAGCAAactGCCTGTGAGTGAGATGCTGCACGAGGCCAACAGTTGTTTTGAGACGGATGGGTCTTTTGAAGAAACCAGGAGCAAGAACAGGTACTCTGTGGGCTACGCTACCCAGAAGTCTTGGCTGCTGAATGCCACCGTGGAGGATAACATCACGTTTGGCAGTCCCTTCAACAAACAGAGATACAAGACTGTGATTGATGCCTGCTCCCTGCAGCCTGATGTAGACCTCCTGCCCTTCGGAGACCAGACGGAGATCGGAGAGAGGGGGATCAACCTGAGTGGAGGCCAGAGACAGAGGATATGTGTGGCTCGGGCTCTCTACCAGAACACCAACATCGTCTTCCTGGATGACCCGTTCTCAGCGCTGGACATCCACCTGAGTGACCACCTGATGCAGGAGGGCATTCTGAAGTTCCTACAGGATGATAAACGCACCGTGGTCCTGGTCACACACAAACTGCAGTACCTCATCCACGCTGACTGGATCATAGCCATGAAGGATGGCTCAGTGCTGAGGGAAGGCActctgaaggacattcagactcATGATGTAGAGCTGTATGAACACTGGAAGACCCTGATGAACAGACAGGACCAGGAACTAGAGAAGGACACTGAGATTGATAACTGTCAGACTGCTCTGGAGAGGAAGACCCTGAGAAGAGCTTTCTACTCCAGAGAGGCCAAGAACCAGGTCGACGATGACGAAGAAGaggaggaagaggaggaggaagaggacgacAACATGTCGACGACCACCAGTCGGCGCTCTAAGATCCCGTGGAGGGTGTGCTGGCAGTACCTGTCCTCTGGTGGCTTCCTCATGGTCTTCCTCATGGTCTTCTCCAAGCTGCTGAAACACTCCGTCATGGTCGCCATCGACTACTGGCTGGCCGAATGGACTGCTAATGGCGATGGCCCAGTTAATGGGACTGCTTATGACGATGGCCCAGTCAATGGGACTGCTAATGACGATGCTAATGGATATGCCCCAGACTTTGGAAATGTTACAAGAGACTTTGTCAATGCCTCTGCAGCAGCTGTCTTCTCCAATCGGACAAACTCAGCGGCTGGTCTGCCTGACTCCTACTATGTGCCAGTGTTTATCATCCTGTGTGGAGCGGGGATAGCCCTGTGTCTGATCACCTCTCTGACTGTGGAGTTCCTGGGTCTGTCTGCTGCTACCAACCTGCACCACAACCTGCTCAACAAGATCATCCACgcacctatcagATTCTTTGACGTGACCCCCTTGGGCCAGATCCTGAACCGTTTCTCAGCTGACACCAACATCATAGATCAGCACATCCCTCCTACCCTGGAGTCTTTGACCCGCTCCACTCTGCTCTGCCTGTCAGCCATCGGGGTCATAGCGTTCGTCACCCCAAGCTTCCTCATCGCTCTGATTCCTCTGGCTGTGTCCTTCTACTTTATACAGAAGTACTTCCGGGTCGCCTCAAAgGACCTTCAGGACTTAGATGACTCCACCCAGCTTCCTCTGCTCTGCCACTTCTCTGAGACTGCAGAGGGACTCACCACCATCCGAGCATTCAGACATGAATCTCGATTCAAGCAGAAGATGCTGGAGCTGACAGATACCAACAACACAGCCTACCTGTTCCTCTCTGCTGCCAACCGCTGGTTGGAGGTCAGAACGgacTACTTGGGTGCTGTCATTGTGTTAACAGCAGCAGTTGCCTCGATATGGAGCTCTGGCAAGAACCTTCCCTCGAGCATGGTGGGGTTAGGCCTGACCTACGCCCTTACAGTGACCAACTACCTGAACTGGGTGGTGAGGAACCTGGCTGACTTAGAGGTCCAGATGGCTGCTGTCAAGAAGGTCAACAGCTTCCTGAGTACAGAGTCTGAGAACTACGAAGGCTCCATGGATACCACCCAGGTCCCCGAGGACTGGCCCCAGCACGGAGAGATAAAGATCCAGGATCTGTGTGTACGTTACGACCCCCTTCTGAAGCCTGTCCTCAAACACGTTAATGCCTACATCAACCCCGGACAGAAGgtgGGCATCTGTGGACGCACAGGAAGTGGaaagtcctccctctctctggccttcTTCAATATGGTCGACGTGTTTGAAGGGCGGATCATCATTGATGGTATAGACATCTGTAAGCTGCCCCTCCAGACCCTGAGGTCTCGTCTGTCCATCATCCTCCAGGACCCGGTGCTGTTCAGCGGATCCATCCGGTTTAACCTGGACCCAGAGCGTACCTGTACTGATGACAGACTGTGGGAGGCGCTAGAAATCGCCCAGCTGAAGAACATGGTCAAAGCCCTTTCTGGGGGACTAgaCGCGGTggtgacagagggaggggagaactTCAGTGTGGGTCAGAGGCAGTTGTTCTGTCTGGCCAGAGCCTTCGTCAGGAAGAGCTCCATCCTCATTATGGATGAAGCCACTGCATCCATCGACATGGCAACGGAGAATGTCTTACAGAAGGTGGTGATGACAGCCTTCGCCGACCGAACTGTCGTCACTATTGCACATCGTGTCCACACCATCCTGGAAGCTGACCTGGTGATCGTGATGAAGCGAGGGAACATCTTAGAGATCGACAAACCAGAGACCCTTCTGGAGAACGAGGACGGCATGTTCGCTTCCTTCGTCAGGGCTGACATGTAGGCTCACACACTGTCAGCCGGCACACCATCAGTCTATCAATGAATCAGCCTCCTCAGTGTTTCCCACAATGCTTAGGTGGGGCGCAGAGTTCCagatattattaccattattgaCTGAAGCTCATACTGTAGGTTTTAGACAGGAGCCAGGCCGGTTGACCACCTCCACTTGGTAatggtaggggaaacactgcttcCCAAAGCACCACTGATGGCCTTCCTGTGTTGATTATTGGTAATGTATTAGTTATTGAGTGATTGATTGAATGAGTGACCTATTAACTTGGTCGTGTAAGAATCACAATCGGTCGTTAAATATGATTACAATTTTACAAAGTTTTACCTAAATGTTTTAtgtttaaattatatatttaGTTACTTATTACTTACTATAtgatgtatgtatatgtatatattttacacCCTTATTCATAGGTAAGCAATAAGCAGGTATAGTGTAGTATTACTACATTGGTACGAACACTGTAGGGTATATCGCTGGAGCATTTTTAGCCTGGTGACCCTTTGTCTGTCTGATTTGATGCGATGCTGACTGAACCATGGGACTGTGGACATTTAGTGGTCACTGACTCCTCTTTGAAAAAGGACAGCTTTCACCCATTGGGTGTTCTCTAAAGGACTGAATCTTAATGTGAAATGTGCAGGCCTAACTTCAACTCATACAGAACTTGTGTACTGTAAACCACACAACCACCCATGTCAAGATGTATGTGAAAACTTGGAGTTACGCATGTTGGTGTTAAGTTAAGATCCAGCCCTAAATGATAAGGGGAGATTCCGCTTTCTTCTACCAGCCATAAGCCAGGCCAGCGTTAGTTTCTACCATACATGGTGCTGGCTGGTGTAATTGGTCAGGAAAGTGGTTTCTATTTTCAGTATTAAACCTGGTTTCTGGGGAGCTGTGCCACTGTCCCACTGTAGTACCTGAATATTTATAGTTATTTTGCATATCGAACAATGATCATTTTATATTGACTtctttgtattgtattatagcctGAATGACAAACTGATTATTGTAAGCTACACTTTGAAGAATGTCAGTATCTGTTTTACCGATATACTgctgtgttgttttgtttgtcaGTGTAAAGCGGTTTCTCATCTCAAGAAATTTGTTTTTAAATCATTCTTCATTCTTATTCAATCCCAAACTCATGACCCAGAATTCCTGCCCTACTTTCCTTACACCCGTGTGGTCTGTTTTCCCACTCATGTTTTTAACTCAAGACTCCCTCTCTATAATCTATGAATGGGTAGGCGTCTTCTAGCCTGGTTGAACAAGACTGAACCATTGTTTCGTTTAGCTTGGATTCCAGGCTACGTATCTCCCCTCAACCTCCATACTCTCCATTGTATACATTATAAGTGAGTAGCAGCTAAGTATATTTAATGTAGCTTCTGCTGTGGCGGGGGGTCCATGTAAAGGCCAAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1510380 lncRNA downstream 14213 70775764 ~ 70776821 (-) True LOC110490643
TU1510378 lncRNA downstream 36041 70752185 ~ 70754993 (-) True LOC118936248
TU1510381 lncRNA downstream 57755 70731008 ~ 70733279 (-) True G1323101
TU1510373 lncRNA downstream 61757 70728898 ~ 70729277 (-) True G1323094
TU1510370 lncRNA downstream 72961 70717610 ~ 70718073 (-) True G1323091
TU1510422 lncRNA upstream 15887 70875375 ~ 70875577 (-) True G1323137
TU1510428 lncRNA upstream 17310 70876798 ~ 70877602 (-) True G1323138
TU1510441 lncRNA upstream 37913 70897401 ~ 70898052 (-) True G1323151
TU1510457 lncRNA upstream 63247 70922735 ~ 70923376 (-) True G1323167
TU1510496 lncRNA upstream 135902 70995390 ~ 70995795 (-) True G1323205
XM_036945197.1 mRNA downstream 3298 70781695 ~ 70787736 (-) True LOC110490694
XR_005036354.1 mRNA downstream 13605 70777289 ~ 70777429 (-) False LOC118938960
XM_036945192.1 mRNA downstream 14866 70762977 ~ 70776168 (-) False LOC110490643
XM_036945193.1 mRNA downstream 14866 70762977 ~ 70776168 (-) False LOC110490643
XM_036945191.1 mRNA downstream 14871 70762977 ~ 70776163 (-) False LOC110490643
XM_036945559.1 mRNA upstream 33741 70893229 ~ 70894811 (-) True LOC118938899
XM_036945208.1 mRNA upstream 314482 71173970 ~ 71198905 (-) True LOC118936537
XM_036945211.1 mRNA upstream 340032 71199520 ~ 71237895 (-) False LOC110490709
LOC118938839 mRNA upstream 341760 71201248 ~ 71201989 (-) True LOC118938839
XM_036945212.1 mRNA upstream 341773 71201261 ~ 71213281 (-) False LOC110490706
TU1510280 other downstream 245814 70543356 ~ 70545220 (-) True LOC110490645
TU1510302 other downstream 253895 70536452 ~ 70537139 (-) True G1323036
TU1509441 other downstream 891331 69898685 ~ 69899703 (-) True G1322348
TU1509018 other downstream 1227994 69562310 ~ 69563040 (-) True G1321997
TU1508670 other downstream 1568006 69220303 ~ 69223028 (-) True G1321729
TU1510499 other upstream 165763 71025251 ~ 71039522 (-) True G1323207
TU1510608 other upstream 343012 71202500 ~ 71237846 (-) False G1323296
TU1510607 other upstream 343252 71202740 ~ 71237846 (-) True G1323296
TU1511211 other upstream 997795 71857283 ~ 71922908 (-) True LOC118938840
TU1512018 other upstream 1188476 72047964 ~ 72050171 (-) False LOC110500989

Expression Profile