RNA id: XM_036945208.1


Basic Information

Item Value
RNA id XM_036945208.1
length 6477
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC118936537
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 71173970 ~ 71198905 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTGATAAAAAGAAACAGCGAAAGGGAGAGAGGGCGTATGAAAGAGAGCCGATGAGAATGGTACAAACCCGAACAGCTTTGTGTGTCACACTCGAATACATCGCATCCACAGCTATGACCTAGGCGCGGATCGTCGCTCTCAAGACAAGCGCAACATCGGAGAGAGCAATTACGCACATGGTTCTGATAGAGAATGAATGCGAAGCTGTATCCAACAATTCCAAAACGCCCGGTTGATCTCATTTTGCTACCATTAGAGCATCAACTGGATTACCATAAGGGAGAGACGAGAACGGAGCACAGTAGCAACGTCTTTACAATTGAGGAATAAGAGATTTTGCTCCAATAATTGAATCATTTACTTTTCATCAAAACACAAATATTTGTATGTATTTAGAGGTGTATTTCCAAGGACACATACATTAAAGCACGGATAGCCGTCATTAGGTCCACTCGGATTTGATCATATTGACACTTTATTAGTTATCCTGATGGAAACTGCTTCAAAAGCTCGTCGGCTATCCAATGTGTCCACGGCATCTAACGTGTCCAATGTGTCCACGTCCAGCGCAGGGACTGAGGTAGGACAGAGCGATGTGCAGATTTGGGGGGACAGACCTTTACCTGTCGACTACCTTGGTGACATCTCGATCCTGGATGACGGGAGATGGTCTAACTCTAGCGTGAAGAAACATCACCACAAGCACAACCTGAAGCACCGCTACGAACTGCTGGAGACACTGGGGAAAGGGACATACGGCAAAGTGAAGAAAGCCATCGAGAGACAATCCGGCAAAGTGGTGGCCATTAAGTCCATCAGGAAGGAGAAGATCAAGGATGATCAGGACATGGTTCACATCCGCAGAGAGATCGAGATCATGTCCTCCCTCAAACACCCTCACATCATCTCCATCTACGAAGTGTTTGAGAACAAGGACAAGATAGTGATCGTGATGGAATACGCCAGTAAGGGAGAGTTGTATGATTACATCAGCGAGCGACGgcggctgagcgagagagagacacgacACTTCTTCAGGCAGATTGTTTCTGCCGTGCACCATTGTCACAAGAACGGAGTGGTGCACAGGGATTTAAAACTGGAAAACGTGCTGCTGGATGAAAACTGTAATATCAAGATTGCTGACTTTGGTCTGTCCAACCTTTACCACAAAGACGAGCTCCTTCAGACGTTCTGTGGCAGCCCTCTGTACGCCTCACCAGAGATCGTCAACGGCAGGCCCTACCATGGtccagagGTAGACAGTTGGGCCCTGGGAGTGCTTCTCTACACCCTGGTCTATGGGACCATGCCCTTTGATGGGGAAGACCACAATAAACTCATCCGCCAGATCACCAACGGAGAGTACAGGGAACCTACACAGTCCTCAGATGCTCGTGGTCTGATCCGCTGGATGTTGATGGTTAACCCGGAGCGTCGAGCCACGGTGGAAGACATCGCCAACCACTGGTGGGTCAATTGGGGCTGGAAGAccactgtgtgtgactgtgacgtccagaaggacaacagtggCTGCATCTCTTCTCCAACGCTAGCACGCTTTATCGATTGGCAGAACCGCACCACAGAGTCACCCAGGGTGGTGCCGGTCAAGCCCCCCCGCTCGGAACACCCTGCCGTACCCCCCCACGCTGGCCGCCAGCGCCTGAGGAAGTCCAGGAAGGAGAATGATAGCGGAGCGCTCCACCATCACACCGCGTGGGAAGACAAAGACAAACCAGGACTGAAGAGACCCAAGGGGATCCTGAAGATGCATGTGTCTGAGCAGAGGTCCCACAGCCTGGGGGAGATCGAGCTGAGTCGCTCCCTGCACTTCCACGAGGGAAGGGAGCTGCTCTCCAGCCccgagagagatgaggaagaggacgATGATCAGGATCGCCTGGGGGTCTCGCCGGCCAAGATGGTGCCCACCCTCCCCAAGAAGGGCATCCTGAAGAACAACCAGCAGCGGGAGTCTGGCTACTACTCCTCCCCGGAGCGCAGTGAGTCCTCTGAACTGCTAGGGGGCAGCACCTCCATGGCCCCACCCGCCAGCTCACCAACAAAGAGGTCCATGGGGAGAAAGGGCATATTGAAGCGTAATGGGAAGTACGGCAACTCCACTTCCTTCCACAGTGGCTTGTCCAATATGAGCTACCACGGAGAGACTCCGGGGGACTCGGGCCTCTCTCGCAGCCAGAGTAAACCCTCCAGTATTGTCTGTGAGGAGATGGGTCTCTCCAGTGTTCCCCCCTTAATGGGAATGGATTGGTCTCCCTCGTCCCCGCAGCCACACGTCAGGGCCTGTATGTCGGCTGAGGATCTACTCCAGCTGGCAGGCTTCAGACGGGGCCTCCAGACGGCTGCAGGGGGGCTCCATGGGGGGAAGGTGGGGACCCGAGGGACACCAGGGTCTCCTGGTGACGACGGCAGCTTCTCTCTGCTAGGGGACATGGATGATGTGACCCAGGTCTACCAACACACCCTGGACATCAGCAGCAATCTGACCTAGAGGAGGTGGAGTTGGGAGTTTGGAAGGGAAGGGACATGGGAAGGACAGACACACACTTGAACCTTCATTTCTGGGTTAGGACTGGCCAGGTGTGTTGTGAACTGGGCATCCCAGCCACCTTAATGTACTGAATCTACCCTCTCAGAGACAGTGCTGCTGTACATCTTTATATGTTCAATAGAGCTAAATAAGTATTGTGTTGTATGTCATTCAGAGTCACAAACCATGCTGTGGTGAAGCTCAATGTAGTAGACAGTTAGGACTACTGTTCATGTTATCTCAATGTAATAGACAGTCAGGACTACTGTTCATGTTGTCTCAATGTAACAGACAGTTAGGACTACTGTTCATGTTATCTCAATGTAATGGACAGTCAGGACTACTGTTCATGTTGTCTCAATGTAACAGACAGTTAGGACTACTGTTCATGTTATCTCAATGTAATAGACAGTCAGGACTACTGTTCATGTTATCTCAATGTAATGGACAGTCAGGACTACTGTTCATGTTATCTCAATGTAACAGACAGTTAGGACTACTGTTCATGTTATCTCAATGTAATAGACAGTTAGGACTACTGTTCATGTTATCTCAATGTAATGGACAGTTAGGACTACTGTTCATGTTGTCTCAATGTAACAGACAGTTAGGACTACTGTTCATGTTATCTCAATGTAATAGACAGTCAGGACTACTCTCAATGTAATAGACAGTCAGGACTACTGTTCATGTTATCTCAATGTAACAGACAGTTAGGACTACTGTTCATGTTATCTCAATGTAATAGACAGTTAGGACTACTGTTCATGTTATCTCAATGTAATGGACAGTTAGGACTACTGTTCATGTTATCTCAATATAATGGACAGTCAGGACTACTCTCAATGTAATAGACAGTTAGGACTACTGTTCATGTTATCTCAATGTAATGGACAGTTAGGACTACTGTTCATGTTATCTCAATATAATGGACAGTCAGGACTACTCTCAATGTAATAGACAGTTAGGACTACTGTTCATGTTATCTCAATGTAATAGACAGTTAGGACTACTGTTCATGTTATCTCAACCTAATGATAACCGTGTGTTATCTATTTATATTGTTGAAACAGACATATATTGCCTGTGTGTTTTGGTAATTTCAAGACGTACTGAGGTGTATGTACCCTTCAAGGAATGGTACTGTATAATAGTATTGCTTGATTGAATTGACATGAATGCCATACTTGATATTGGTCCTAATCTAGCAGGACATCTATTGTTCAGTATCACAGTGGGAAGGTTGAAGAGCAAACCGTGTGTATTGATATACGTCTACTGTATGGGCCGTCCACAGGAAGTGCCTTTATTAGTGCTATGTTATCATGTACTGTATTTCCTGAAGGTTTATGGAGGAACAGATAGATAACCAACCAAACTCACCACATGAGACACAGCTATAGGGAGGCGATTCACAGAGCTGTGACCACGCAGTCTCCCGAGTCGAAACAACTAGGACTTGTTCATGTTCGTAACCATTTGGTTTCACAGTAGAACTGTCGTTGTTTTAGAAATGGGACTGAAAGACAGAACGACTGAAAGAACAGAAGGGTAGAGACGTGTAGTCAAAACTTAAGTTGATTCACAGAGTTGTGGCTACAAGCCCTCCAGTCTACAGGACTAGCTCATGTGTAGGCCATATGTAAATGAACTGTCGTTGTTTTAGAAAGAGAAATACTGAAAAAACAAGGGGTAGATAGACGTGAGTTAGTGGGAGGGGTTAATGGGTTGGTTGTAGAGGTCTTGTTTGTGGAGGGAAGTTGGGTGCTGGCCAGGGCTGTTACACCTCTTCCTCCCCAGACTGAAGActgagagtggagagagaaaagagggggttgagagagagagaaagagagagagagggctgagagagggctgagagggctgagagagagagagagagagagagagtgctgagagagtgctgagagagagagagagagaggagatgatagacagagagagcgataGTAGCTTAGTGTAGCTGGGAAAAGaaagggggagtagagagagagagaaaggttgagTGAAAAAGGTAAAATGGAAAGAATGTTTGGAAGGGTGAAGGGAATTATGTTTCAGCTGACCGAATAAGTTCAGCTTTAAGTTGGGAAGATACACAGTTCAACACATTTCAGCTGAAAGTCATTACAGTCACTGTAGCTGAAAGTCATTACAGTCACTGTAGCTGAAAGTCATTACAGTCACTGTAGCTGAAAGTCATTACAGTCACTGTAGCTGAAAGTCATTACAGTCACTGTAGCTGAAAGTCATTACAGTCACTGTAGCTGAAAGTCATTACAGTCACTGTAGCTGAAAGTCATTACAGTCACTGTAGCTGAAAGTCATTACAGTCACTGTAGCTGAAAGTCATTACAGTCACTGTAGCTGAAAGTCATTACAGTCACTGTAGCTGAAAGTCATTACAGCCACTGCAGCTGAAAGTCATTACAGTCACTGTAGCTGAAGGTCATTACAGTCACTGTAGGTGAAAGTCATTACAGTCACTGTAGCTGGTACTATACATCCTTGGTAgaacagcagtgtgttagctCACTGTGAGTGTTACATATAGAttaccttctctctctacagcctGTGTGCTGCTGGACCAGTTATATGTGCTCTATGAAGCGTGGCTTGGTGAGAGGGCATAACCTTCAGTTCCACTCTAGAACAGAAATAACCCAGGCAATTATATGTTTCAGTGTGTTTGGGTTTCTCAAACACCACACGGTTGTTTAAATGTCtgggtttgtgtcccaaatggcaccctattggtTACTTTTGAACGCAGTTCTATGGGCCCTTTgtgaaaaggagtgcactacataggaaataggttgccatttgggacacaggcccaGACATTTAAACAATCGGGTGGTGTCCGAGAAACCCAAACAGACTGAAGCATATTAGTGTTGAGAAATCAATGGAGCCCCACTGTGGAAATGTCACATACGCCAACGGATAGCTcatcaaaataaatcaaaatcAGCCAATGAATGATTCTGAAAGGTCAGGGGTCTTTATGGCTCAGGGCCCAGGGTGTTACCATAACAACCAACAGTCTTGTTAAGTGTTGTATGGACTGAAATGGTATTTTGTAATTGGATTTTACAGCGCTGAAAAATGATACTATGTTAGTATTTTCATAGGATTTGTTTTTAATCATGCTTCTGTTTTTGATTTTTCCAAAATATAGAAACATTGTATGGTTTTATTTTATGGGCAGAGGATGTGTACCAGGTCTGCCTTAGTAACTGGAAGGGGACCTGCCTCCTATGAAAACAGGGTtagcgtatgtgtgtgtataagggacTGAAGAGGTTAAAGTTCAACAACAGTAAAGAACAAGTTGTAAACACAAGTGATTCTCTGTGAGTCGTAagactgaaaacacacacatgcacgtgcctgcgaacgcacgcacgcacacacacacacacacacacacctatgtaGAATGTAATGGAAAAGAAAGGGGTGCCATCAAGTCTCAACAGGTCTAAGAGCCCCCAAGCTGCCCTCTGCCTAACTAGACAAAACAGATGTTAGCTTACATCTGTTTGTTACAATATGTCATATAACTATAGGAAAACTTGACTAGATATTATCTTATGATGAAGTATTATAATGttatttaagctttattttgCTGCTGTCTATTAATAGTGAAgttattactgttactatagttactatctGGTTATAGATGGTTCAACCTGGATCGTGCTTTTGTTTGTTACCATCACAGATGTGCTGTTCTGGTTTTTATAAAAACAGTTTCAGATTGTGTAATAGCGTTGTTCTCTACTACGTATTACAGTGGAAATCATGTATGTAGTCAGGAGAGTGAGGAAACCACAGATTTTCACAATATCTTCTCTCTGAATCATCTCAAATAAACAGCTTCAT

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08800 NUAK; NUAK family, SNF1-like kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1510547 lncRNA downstream 27828 71145605 ~ 71146142 (-) False G1323248
TU1510548 lncRNA downstream 27992 71145605 ~ 71145978 (-) True G1323248
TU1510536 lncRNA downstream 57422 71115601 ~ 71116548 (-) True G1323238
TU1510535 lncRNA downstream 57856 71114434 ~ 71116114 (-) False G1323238
TU1510532 lncRNA downstream 107670 71065825 ~ 71066300 (-) True G1323235
TU1510597 lncRNA upstream 8666 71207571 ~ 71214069 (-) True LOC110490706
TU1510611 lncRNA upstream 17147 71216052 ~ 71221279 (-) True G1323298
TU1510617 lncRNA upstream 42163 71241068 ~ 71241369 (-) True G1323304
TU1510623 lncRNA upstream 47097 71246002 ~ 71246204 (-) True G1323309
TU1510641 lncRNA upstream 70546 71269451 ~ 71269683 (-) True G1323319
XM_036945559.1 mRNA downstream 279159 70893229 ~ 70894811 (-) True LOC118938899
XM_036945198.1 mRNA downstream 313638 70792490 ~ 70860332 (-) True LOC110516361
XM_036945200.1 mRNA downstream 314482 70792490 ~ 70859488 (-) False LOC110516361
XM_036945201.1 mRNA downstream 314483 70792490 ~ 70859487 (-) False LOC110516361
XM_036945203.1 mRNA downstream 314483 70792490 ~ 70859487 (-) False LOC110516361
XM_036945211.1 mRNA upstream 615 71199520 ~ 71237895 (-) False LOC110490709
LOC118938839 mRNA upstream 2343 71201248 ~ 71201989 (-) True LOC118938839
XM_036945212.1 mRNA upstream 2356 71201261 ~ 71213281 (-) False LOC110490706
XM_021564166.2 mRNA upstream 29963 71228868 ~ 71232128 (-) False LOC110490707
XM_036945209.1 mRNA upstream 29963 71228868 ~ 71232129 (-) True LOC110490707
TU1510499 other downstream 134448 71025251 ~ 71039522 (-) True G1323207
TU1510280 other downstream 628750 70543356 ~ 70545220 (-) True LOC110490645
TU1510302 other downstream 636831 70536452 ~ 70537139 (-) True G1323036
TU1509441 other downstream 1274267 69898685 ~ 69899703 (-) True G1322348
TU1509018 other downstream 1610930 69562310 ~ 69563040 (-) True G1321997
TU1510608 other upstream 3595 71202500 ~ 71237846 (-) False G1323296
TU1510607 other upstream 3835 71202740 ~ 71237846 (-) True G1323296
TU1511211 other upstream 658378 71857283 ~ 71922908 (-) True LOC118938840
TU1512018 other upstream 849059 72047964 ~ 72050171 (-) False LOC110500989
TU1512017 other upstream 858198 72057103 ~ 72150937 (-) True LOC110500989

Expression Profile