RNA id: LOC118938839



Basic Information


Item Value
RNA id LOC118938839
length 742
RNA type mRNA
GC content 0.45
exon number 1
gene id LOC118938839
representative True

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 71201248 ~ 71201989 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTAGCTGTGgagactgtgggaaaagcttcaatcAGAAGGGGGCCCTAATTAAGCATATAcgaactcacacaggagagaaattatTTAGCTGTGATGAATGTGGGAAAAGCTTCCATTTAAAGGGGAACCTAAAGAAGCATGaactgactcacacaggagagaaatcatttagctgtggtgactgtgggaaaagaTTCAAACGCAGGGAAAACTTAACTATGCATAtactgactcacacaggagagaaacaatTTAGCTGTGGTGACTGCGGGAAAAGCTTCTCCCAGAAGGGGAACCTTAGTAGGCACATACTGACTCACACAGGGGAGATGCCATTTAGCTGTGtagactgtgggaaaagcttcagcCAGAAGGGGACCCTAACGGTGCATATacggactcacacaggagagaaaccatttagctgtgtAGACTGTGGGGAAAGCTTCAGCCAGAAGGGGACCCTAACGGTGCATATacggactcacacaggagagaaaccatttagctgtgtAGACTGTGGGGAAAGCTTCAGCCAGAAGGGGACCCTAACGATGCATATacggactcacacaggagagaaataaaTAAGCTGTGATGTGTGCGGAGAAAGTGTCACTCGAAAGTCTAACTTACTGATCCATGTGGAAAACAGGATGAAAACTGAAAGAAAACTGAACATTTGTACAAAGACCTGTTTAGTCACAAGATGAGAATAAAAAGGCAGGATGTGGACAATAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1510547 lncRNA downstream 55106 71145605 ~ 71146142 (-) False G1323248
TU1510548 lncRNA downstream 55270 71145605 ~ 71145978 (-) True G1323248
TU1510536 lncRNA downstream 84700 71115601 ~ 71116548 (-) True G1323238
TU1510535 lncRNA downstream 85134 71114434 ~ 71116114 (-) False G1323238
TU1510532 lncRNA downstream 134948 71065825 ~ 71066300 (-) True G1323235
TU1510597 lncRNA upstream 5582 71207571 ~ 71214069 (-) True LOC110490706
TU1510611 lncRNA upstream 14063 71216052 ~ 71221279 (-) True G1323298
TU1510617 lncRNA upstream 39079 71241068 ~ 71241369 (-) True G1323304
TU1510623 lncRNA upstream 44013 71246002 ~ 71246204 (-) True G1323309
TU1510641 lncRNA upstream 67462 71269451 ~ 71269683 (-) True G1323319
XM_036945208.1 mRNA downstream 2343 71173970 ~ 71198905 (-) True LOC118936537
XM_036945559.1 mRNA downstream 306437 70893229 ~ 70894811 (-) True LOC118938899
XM_036945198.1 mRNA downstream 340916 70792490 ~ 70860332 (-) True LOC110516361
XM_036945200.1 mRNA downstream 341760 70792490 ~ 70859488 (-) False LOC110516361
XM_036945203.1 mRNA downstream 341761 70792490 ~ 70859487 (-) False LOC110516361
XM_021564166.2 mRNA upstream 26879 71228868 ~ 71232128 (-) False LOC110490707
XM_036945209.1 mRNA upstream 26879 71228868 ~ 71232129 (-) True LOC110490707
XM_021564168.2 mRNA upstream 30990 71232979 ~ 71237895 (-) True LOC110490709
XM_036945591.1 mRNA upstream 45927 71247916 ~ 71263582 (-) True LOC118938931
XM_036945560.1 mRNA upstream 68368 71270357 ~ 71271172 (-) True LOC118938900
TU1510499 other downstream 161726 71025251 ~ 71039522 (-) True G1323207
TU1510280 other downstream 656028 70543356 ~ 70545220 (-) True LOC110490645
TU1510302 other downstream 664109 70536452 ~ 70537139 (-) True G1323036
TU1509441 other downstream 1301545 69898685 ~ 69899703 (-) True G1322348
TU1509018 other downstream 1638208 69562310 ~ 69563040 (-) True G1321997
TU1510608 other upstream 511 71202500 ~ 71237846 (-) False G1323296
TU1510607 other upstream 751 71202740 ~ 71237846 (-) True G1323296
TU1511211 other upstream 655294 71857283 ~ 71922908 (-) True LOC118938840
TU1512018 other upstream 845975 72047964 ~ 72050171 (-) False LOC110500989
TU1512017 other upstream 855114 72057103 ~ 72150937 (-) True LOC110500989

Expression Profile