RNA id: XM_036945209.1


Basic Information

Item Value
RNA id XM_036945209.1
length 1862
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110490707
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 71228868 ~ 71232129 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaacagaacaaaacaatACGGAAGTAAAACGGTAGGGAGAGTTTGTTTGGGTTTGTTTGTCCTCGTCCGTGAAAACATACATGCTGAATACCCAACTTTCAGTCGACTGAAACATGTCTAGACTCCAGTCGTTTCGTGTGTTTTTAAATGAGCGTTTAACCGCGGCAGCTGTGGAGATTTTCGGGGCATTTGAAGAAACGGTAGCGGACTACCAGGAGGAGAATGATCGGTTACGGAGACTGCTGCGGATCACACCGGAGATAAAACTATattccctgcagctctctgtctctgaagaGGTTCTCCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGGAGAACCCAGAGCTTCcacagattaaagaggaacaggaggaactcaggaccagtcaggaggaagagcagcttcaaGGGCTGGAGGCTGATTTCAAATTCACTCCTTCCTGTGTGAAAAGTGAATGTGACCAGGAGGACCCATTTCAGTCCTTCACTTCTCCCCAAACCCAGActgtggagaacagagagagtgatcCTAAACAAGTGGATCTCACACCTTCTGTTACTGTGACCCACCTTAAGGGTCTCTACATTCCCTGTGACCCTCCAGAGGATCAAAACAATGCCTCCAGCCACAGCTCAGCCGTAAGCAGTGACCCCGTAGGACTTGACAGCAGCCCGCGATTGGATCCCAGCCCATCGATGGCGGAACATTGTTCCAGCACGTCTAGAAAAACTCACCACTGCCGTGACTGTGGTGAAAAGTTTGCTCTGAAAGCTGCCCTGCAGAGGCATATGACTCTCTACAAGAAGAGACTCCGTGAATGCAGTTTCTGCAGAAAACGCTGCACCTCCACCTGTAAACTAAAGGCCCATATCCGCCTCTGTCACAGTGGGAGACCCTGCACCTGCCCTGTTTGTGGCAAGACCTTCAAACTCAAAGGATATCTGTCCAAGCACATGAGGATTCACACAGGACTgggagagaaaccatttagctgtggagactgtgggaaaagcttcaatTTGAAGGGGAACCTAAAGAACCATATGCTGACTCACACAGGAGATAAATCATTTAGCTGTGgagactgtgggaaaagcttcatTCATAAGTGGAACCTAAGGAGCCATATgctgactcacacaggagagaaaccatttagctgtggagaatgtgggaaaagcttcaatcAGGAGGGGAACCTACGGAACCATAAACGGACTCACACAGGAGGGAAACCATTTAGCTGTGATAACTGTGGGAAAAGCTTTAATCAGAACGGGTCCCTAAAGAAGCATAgactgactcacacaggagagaaaccatttagctgtggtgactgtgggaaaagcttcaatcAGAAGGGGAACCTAAGAAACCATAAActcactcacacaggagagaaaccatttagctgtgaTGATTGCGGGAAAAGCTTCACTCAAAAGTCTAACTTACTGACGCATGTGAAAAAAATACACAAAGGAGGAAAACAGGATTAAAACTGAAAGAAAGAACATTATGACAAAGATCTATTTAGTCACAAGATGAACATAAAAAGTCAGGATGTGGACAATTCTGAGTacacgctcagacacacataGCTGGAATAAGTAAATGAAGTCtatgagagaatagtcagattaacaGATGACTAAAATATTAGTGCAGATGGCATTATTTTGTCACGTGCATAGATGTGTTATAGGTAATGAATGTGTAGGGAACTTCTGAAATTCTACAGATTTTGTGGCACAGCAGGAATACACACAAAccaaaaagtaaaataatggaattaaggaatatataagTATTAGGATGAGCCATGTCGGAGTGGCGTtgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1510611 lncRNA downstream 7589 71216052 ~ 71221279 (-) True G1323298
TU1510597 lncRNA downstream 14799 71207571 ~ 71214069 (-) True LOC110490706
TU1510547 lncRNA downstream 82726 71145605 ~ 71146142 (-) False G1323248
TU1510548 lncRNA downstream 82890 71145605 ~ 71145978 (-) True G1323248
TU1510536 lncRNA downstream 112320 71115601 ~ 71116548 (-) True G1323238
TU1510617 lncRNA upstream 8939 71241068 ~ 71241369 (-) True G1323304
TU1510623 lncRNA upstream 13873 71246002 ~ 71246204 (-) True G1323309
TU1510641 lncRNA upstream 37322 71269451 ~ 71269683 (-) True G1323319
TU1510711 lncRNA upstream 65624 71297753 ~ 71298254 (-) True G1323381
TU1510732 lncRNA upstream 103351 71335480 ~ 71336102 (-) True G1323402
XM_036945212.1 mRNA downstream 15587 71201261 ~ 71213281 (-) False LOC110490706
LOC118938839 mRNA downstream 26879 71201248 ~ 71201989 (-) True LOC118938839
XM_036945208.1 mRNA downstream 29963 71173970 ~ 71198905 (-) True LOC118936537
XM_036945559.1 mRNA downstream 334057 70893229 ~ 70894811 (-) True LOC118938899
XM_036945198.1 mRNA downstream 368536 70792490 ~ 70860332 (-) True LOC110516361
XM_021564168.2 mRNA upstream 850 71232979 ~ 71237895 (-) True LOC110490709
XM_036945591.1 mRNA upstream 15787 71247916 ~ 71263582 (-) True LOC118938931
XM_036945560.1 mRNA upstream 38228 71270357 ~ 71271172 (-) True LOC118938900
XM_036945225.1 mRNA upstream 455751 71687880 ~ 71734050 (-) False LOC110490714
XM_036945227.1 mRNA upstream 455751 71687880 ~ 71734271 (-) False LOC110490714
TU1510499 other downstream 189346 71025251 ~ 71039522 (-) True G1323207
TU1510280 other downstream 683648 70543356 ~ 70545220 (-) True LOC110490645
TU1510302 other downstream 691729 70536452 ~ 70537139 (-) True G1323036
TU1509441 other downstream 1329165 69898685 ~ 69899703 (-) True G1322348
TU1509018 other downstream 1665828 69562310 ~ 69563040 (-) True G1321997
TU1511211 other upstream 625154 71857283 ~ 71922908 (-) True LOC118938840
TU1512018 other upstream 815835 72047964 ~ 72050171 (-) False LOC110500989
TU1512017 other upstream 824974 72057103 ~ 72150937 (-) True LOC110500989
TU1512083 other upstream 932504 72164633 ~ 72168158 (-) True LOC110490626
TU1512124 other upstream 1008419 72240548 ~ 72260352 (-) False G1324464

Expression Profile