RNA id: XM_036945228.1


Basic Information

Item Value
RNA id XM_036945228.1
length 1515
RNA type mRNA
GC content 0.55
exon number 11
gene id LOC110490714
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 71687880 ~ 71734443 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAAAAAGTAGGCTATGTATTGACTGTCTCTATTGGCATAACCAACTCCCAATACTACTACATAGACTTGTCCAGACAAAACAATGGCTTAcaggagagacagaaacatgagGGATGTCTACGATGAACGCTTCCTACCAGACAGACCGGCCCCATATCCCAGATCAGCTGGAGCAGGGCCTGTAGAGAGGAGGCCGGCTGGTTTCGGAAGGCCAGACGAGGAGTACAATCGAGGGTTTGAGTACGACGGGCCTCGCTTTTATCCAAATGGAGGCCCTCGAGGTTACCATGGCGAGGATCAAAGAGGCTACCATGGCGACAGCCTTCATTTTCCTAATGAGCGCAGAGGTATCCCACCTTCCCGGAGACCGGAGGAGCCGTACCCCTACCCTTCTAGACCACCTCCTAGAGAGGACCCCCATACAACACGCCAGATGGAGTTCAGAAGCAGTGGCCGTGCAGCACCCCCTCCCCCCAGCGTCAGGGCTCAGGGGATGTACCCTGCACCCCGCTCCCTGTCTGCTGTGGTCCCAGAGGGGGGTGATGACACCCTGATGCAGGCCATCCTAAACCTGGAcagaggaaggaaAGGCCCCTTGCCTCCCCTGAGAGCAGacgtccccccctccccccacagccGGTCCGGCTCCACTGTCAGTAGCAAGAGCTACTCTCCTGACAGAGCCAAGGGTCTCCCCCACCCCGCCCAGCAGAAAAGGTGTGAGGAGTTTTGTCAGAGCGGGATGTCTGacaAAGACAGGCCCCCTGGTCATTCTCAGGACGGGTCACCTCAGAGCATAGCGTCCACTAAGgaGGAGGCTCATGTCCTAGAGTGGGACCGTGAGGAGGGCCTGCCCCCCATCGATGAGACCCCCAAGACCCAGGATGACTTCCAGGAGCGCCGAGCGCAGGCCATCGGAGCCAAGGCCCGGGAAATAGAGCAGGTGTACCGGCAGGACTGTGAGACGTTTGGCATGGTAGTGAAGATGCTGGTTGCTAAGGACGCCAATCTGGAGAAGCAGCTGCAGACTCCACTCCGAGAGAACCTGGGAGAGATCAGGGAGCGTTGCCTTGACGACCTCAAGCACTTCATCACCGATCTGGATCAGGTGATTGAGGTCGTACGGCAACCGGAACCCTCCACCTGAGACAGACAGCCAATCGCGTCCCATCTTACTGTAAGGGAGCCAAACAGGTCCAGTCTTTTTTTTGGGCCTCCGGCATACAGTGAGGGCAGGACTCCCAGGGGTCTGCCATGTGTTAAGACTGTGGATATCTTGAGCAGTATTGGCCCCATGTTTTCCCATCTTTCTGGGTTTCAGGCCAGACGTGCACCAGGTGACCCATATGTACTGATAATGTCCAGCAGTAATTAGTCAAAGTTGTAAAAAACAGTGTTCAAAGTTCTGTTCAGCTACTTCCTCACCACCCGATCAGGGTATTGGTTCTACAATGTCCTTAACAAGTAGAACTGGTATGTCAATTTAGGCTAATAGTTCATCTGGGATTTACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1511045 lncRNA downstream 45548 71641233 ~ 71642332 (-) True G1323665
TU1510907 lncRNA downstream 98692 71588960 ~ 71589188 (-) True G1323549
TU1510887 lncRNA downstream 129403 71558142 ~ 71558477 (-) True G1323531
TU1510882 lncRNA downstream 136839 71550696 ~ 71551041 (-) True G1323526
TU1510880 lncRNA downstream 146089 71541403 ~ 71541791 (-) True G1323524
TU1511076 lncRNA upstream 3431 71737816 ~ 71738162 (-) True G1323688
TU1511113 lncRNA upstream 48137 71782522 ~ 71784574 (-) False G1323712
TU1511117 lncRNA upstream 49037 71783422 ~ 71784574 (-) True G1323712
TU1511124 lncRNA upstream 50199 71784584 ~ 71784982 (-) True G1323713
TU1511134 lncRNA upstream 65297 71799682 ~ 71799947 (-) True G1323723
XM_036945560.1 mRNA downstream 416708 71270357 ~ 71271172 (-) True LOC118938900
XM_036945591.1 mRNA downstream 424298 71247916 ~ 71263582 (-) True LOC118938931
XM_021564168.2 mRNA downstream 449985 71232979 ~ 71237895 (-) True LOC110490709
XM_036945209.1 mRNA downstream 455751 71228868 ~ 71232129 (-) True LOC110490707
XM_021564166.2 mRNA downstream 455752 71228868 ~ 71232128 (-) False LOC110490707
XM_036945235.1 mRNA upstream 107340 71841725 ~ 71923263 (-) False LOC118938840
XM_036945236.1 mRNA upstream 250343 71984728 ~ 72017048 (-) True LOC110490787
XM_036945238.1 mRNA upstream 288432 72022817 ~ 72143317 (-) False LOC110500989
XM_036945244.1 mRNA upstream 288432 72022817 ~ 72150984 (-) False LOC110500989
XM_036945245.1 mRNA upstream 288432 72022817 ~ 72150984 (-) False LOC110500989
TU1510608 other downstream 450034 71202500 ~ 71237846 (-) False G1323296
TU1510607 other downstream 450034 71202740 ~ 71237846 (-) True G1323296
TU1510499 other downstream 648358 71025251 ~ 71039522 (-) True G1323207
TU1510280 other downstream 1142660 70543356 ~ 70545220 (-) True LOC110490645
TU1510302 other downstream 1150741 70536452 ~ 70537139 (-) True G1323036
TU1511211 other upstream 122898 71857283 ~ 71922908 (-) True LOC118938840
TU1512018 other upstream 313579 72047964 ~ 72050171 (-) False LOC110500989
TU1512017 other upstream 322718 72057103 ~ 72150937 (-) True LOC110500989
TU1512083 other upstream 430248 72164633 ~ 72168158 (-) True LOC110490626
TU1512124 other upstream 506163 72240548 ~ 72260352 (-) False G1324464

Expression Profile