RNA id: XM_036945235.1


Basic Information

Item Value
RNA id XM_036945235.1
length 5417
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC118938840
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 71841725 ~ 71923263 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaagaggagaaagaggagagagaggagctgattgCTTCTTCTATTGAcaaatgcaacacacacacaacacacacacacactctgagaggactcccaacacaacacacacacacacactctgagagGACTCCCAACACAAGACACTTTGCTGGATCCTGGAGCTTGGAGCTTAGTATTGGTGTAtcggagtgtgtgtgtactgtggtaccgctgtgtgtgtgagggtgagaGAAGAGTGTCTTTCTAAGGACACCCTGATGAAAAACGGAGCCGGGTTTTCAGGCAGAGCCCCCTGTGTGATCCTCCGCATATCTACCCTGGGGGACCCACCGCGCACTGCCGCCGCCTGTCATCTCCACGACAACTAGAATGGGCTGCAATTTGTGCTCTTTACAGAAACGGGAGGAACACTACAAGCTGCTGTATGAGATTTCACAGGTGAATGGCAGGGACTACTCCAAGGCCAGCCATGACGAGATGGTGGAGGTCATCAGAAGAGACCCCATTGTGGTGCAGGTCGTCCGTCGCCATGGCAACCCCGCACACTCACATCAGACATTACAGGAAGTTCACGTGGTGGACGTGTGCACGCAGACGGACATCACTTTTGAACACATCATGGCCCTGGCTAAGCTGAGGCCTGCTACTCCACCTGTACCCGACATCTGCCCCTTTCTGCTGTCAGACAGCTGTCACTCCATCCACACCATGGAGCATGAATTCTACGAGTGTCCAGAGTACCTCTCCAACACCCCAGCTGAAGTGGACAGGCCAGAGGAGTTTGAGTATGAGCAGGTAGAGCTCTGTCGGCTCAACAGTCAGGAGAAGTTGGGTCTGACGCTGTGCTATCGGACTGACGATGAAGAGGATACAGCTATCTACGTCAGCCACGTTGGACCCAACAGCATTGCTGCCAGGGACGGGCGCATTAGGGAAGGAGATCGAATATTACAGATCAATGGCTGTGACGTACAGGACAGGCAGGAAGCTTTCACTCTCCTGTCCAATGAGGAGTCCAGGAGTATCGTTCTCCTGGTGACCAGACCAGAGGAGGCGTGGCTGGATGAGGAGCACAATGAACTCCTAGAGGAGCTGAAGATGGAGATccttgaggagaggaggaacgagGAGGTGCagaagacaggaggaggagaggagcagGCCAAGCAGCTGGAGGAGGATGACGTCATGACAGACACGGCCACGTGTTCCTCCAATACTCAGGACAAAGACAGCGGCTTGGGGACGGGGCGCAACGAGGAGAGCTCCGAACAGGAAGTCCTCCTAGCCCGTGTCCACCGGAGGCCTGCCCAGGGCCTCAGAGACCGATGGAGGGCCAAGCATGGCCAGGGGCTGGGCAGGAGGGTGGTGGTACCCTCGGACACCCAGGGACCCAGGGGTCTGATCCAAGCCCAGGAGGGTGAGGGTGGAGTGGGGTTAGGACTGGAGTGTGACAGCCGCTTCAAGCAGCTCCTGGAGCTCAAGTGCCAGATCCGTAACAGCGGGGAGTGTGGTGTGTACTATAGCAGGAGAAGCACCATCGAGTGCAGCCTGACGGAGCAGAGTGGGGTGGGGGtcagtggtggtggagggatggaACAGGAGCTGAGGATGTTGAACGATGAGCTGAGGAGTATCGAGCTGGAGTGTCAGAGCATCATGCAGGCCCACCAGCTCCGTAAGAACCAAAGGGATCCCCCCTGCACCCCTATGTGCTCCCCAGGACGAAGCCCCAAACATGGGCGTGAGCAGCATGCCAAGCTGGCCGATATCAACGAGCATCCAGGGGAGAGGCAGTGGGACAGCGACAAGCTAAGGGGGGACAAGGACAGCTCCAGTGCCTATAACACGGCTGAGAGCGCCAGGTCCACTCCTCTAGGCATGGAGAGATCCCCAGACCACTCTCTACAGAGACGCATCAGCCTCACCAACCAGAAGAACCTCCGGAGCACCATGGCAGCCTCCGGCcagtccatctccatccccatcccagACAGAGAGCTCCTGAGTGAGACCTCGACCGGGACCACCACACACAGCCGACAGGATCCCAACCCCAGCCCTGGAACCACGGTCATCTCCAGCAGCCCCGACCAGTCCAACCCTTCCCCCTCCGAGTCAGACCCGGCCCTGCCTGCAGACGACGAGCGCTGCGACCACACCAGGAGCCACCGGGGGCCACGCAGGGTCCCTCCCTACCCGTCCCCTTACCACACAGCCCCCCAGCAGGGCGCCTCTCCAGCCCACGCCAGACACCTTCAGAGCTACATGCAGCAGCTCCTCCAGCAGACCTCCAGTCTGGAGACCtactcccagtcccagctcagccTCCTCAGCGTCTGCCGGGACCGCTCCACCCGCCCGGGGGAACCACGCCTCGAATGGAAGGTCAAAGTTCGAGCCGACGGGACGAAGTATGTAGCCCGGCGACCGGCGAGGGACCGGATTCTACGAGAACGGGCGCTGAGGATCAGGGAGGAGCGTAGTGGAGGGATGACCACGGATGACGACACTATGTCCGAGATGAAGATGGGGCGgtactggagtaaagaggagagaaagCAGCAGCTggccagagccagggagcagaggaggaggagggagtacaTGCAGAGGAGCCGGCTGGAGTGTCTCAGAGAGGGCCCTGGGAGCGGGGCCGAGGGCCGTAAAGAGGTCAACATCCTGGAACTCAGCCACAAGAAGATGATGAAGAAACGCAACAAGAAGATCCTGGATAACTGGATGACCATCCAGGAACTAATGAGTCACGGGGCCAGAGCACCTGAGGACCAGGGGACTAAACAAGTACACAATGCcttcctgtctgttactacagtatagGACCACAGCTCCGGGGTGAAGTTTCCCTGTacacacagatctaggatcatttAAAACTACCCGGGTCGGGCATTAACCATTTGGACGATAATGAAAAACTGACCTCAGAGCAGTGTCTAGGGACAACCttgccccatctctctctctctctctcatcgcgtCCATGCGGTATGACCTTACTTGCCTCGTTCAATGTGGCATTTTTTATAATGGGGAAAATCCTATATTTTTCACACTTTGTAAACTCAGTAACATTTTGTAAACTCTTTTTTTTACACTGGTTGTCGATGCACTGTGAAATGTTTTCTGCAGTTGCTCATTTATGATGTCATGAAACATGTTTCTATCAAAATCAGAATTCTCTGTAAACCACATCATCATCAATCAAGTCAAAGACATCGTGGTACGTTATCATGTTTGCATTGTTTATCCAGCATGGCAGTGATTAACTGTAGTGGTCAGAAATGTACCATATACCTgagaacagacactggactctTGTGCAGAATCCTCcttgtcttttactgaggatCGACCATATAACTGCACAACCCTCTAAGACCCATTCAATATGCCAAGCTGGCCTTGTGAGTCAAAACACCACTAAATCTCTGAAGGAGCTTTCATCATTTCTGAAAATGTCAACTCAGAGTTCTCTTGGAAAATTCTGAAGTCCTGAGAATGTCAATAATTCAGTGGTGTCTCAGAGGCTTTCAGTTTCCCAGtttaaaacagtcttgaaggaaagGTTCACTAGTCAACAGTTTCTCAGTTTATAACAGTCTTTCTTGAAGGAAGGGTTCACTAGTCAACAGTTTCTCTGtttaaaacagtcttgaaggaagggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaagggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaagggTTCATTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaagggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggagggtTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaagggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaggggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaggggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggagggtTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaggggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaagggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaggggTTCACTAGTCAATAGTTTCTCAGtttaaaacagtcttgaaggagggtTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaggggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaagggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaggggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaagggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggagggtTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaagggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaagggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaagggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaagggaAGTTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaagggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaaggaagggTTCACTAGTCAACAGTTTCTCAGtttaaaacagtcttgaagggaAGTTTCACTAGTCAACAGTTTCTCCGTtttaaacagtcttgaaggaagggTTCACTAGTCAATAGTTTCTCAGtttaaaacagtcttgaaggaggggTTCACTAGTCAACAGTTTTTCCCCAACATCTCATTGCAAAAGTGATCTCAATGTTTCTCATCAATGGTAATTCAGTATCACTAATGAAAAAAGTGCATTTCTTACTGATTAAATAATTAATTCAAGTGATTTGATTGTTCCCCGAATACATTAAATGTAATTTATAAATACAAAACatatttattattttgtattgctTATTTTCAATTAGTGTACATTTATTAGTATATTCTGCATATTTTCGGACCTGTCTGAAGATCTCTTTGTATTGTCAAAAATAACACAAGTTATTGTCTCTAACGCATTATATTTCACCTAACAGTCCTTTCTGGCATTTGGTGGGGCTTCAAACGGGTGCTTTTCATTGTACACGGCTCTTCTATCTTTGCTCAGTGTTTATCGTCTTCTTTCCAGTAATCGGTAGTTGGTAACTTCATAGGCAGGTCAATGTGTGCTAATTGTGATTTTTGCAAAGGAAATGTGAATAAATTATTGTTTATCTTTATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1511202 lncRNA downstream 15731 71824391 ~ 71825994 (-) True G1323783
TU1511196 lncRNA downstream 22306 71818733 ~ 71819419 (-) True G1323778
TU1511134 lncRNA downstream 41778 71799682 ~ 71799947 (-) True G1323723
TU1511124 lncRNA downstream 56743 71784584 ~ 71784982 (-) True G1323713
TU1511113 lncRNA downstream 57151 71782522 ~ 71784574 (-) False G1323712
TU1511254 lncRNA upstream 10289 71933552 ~ 71933947 (-) True G1323830
TU1511258 lncRNA upstream 15289 71938552 ~ 71938770 (-) True G1323834
TU1511265 lncRNA upstream 22694 71945957 ~ 71946277 (-) True G1323841
TU1512031 lncRNA upstream 41866 71965129 ~ 71965354 (-) True G1324389
TU1512011 lncRNA upstream 47472 71970735 ~ 72020242 (-) True G1324376
XM_036945221.1 mRNA downstream 107282 71687880 ~ 71734443 (-) True LOC110490714
XM_036945229.1 mRNA downstream 107283 71687880 ~ 71734442 (-) False LOC110490714
XM_036945230.1 mRNA downstream 107285 71687880 ~ 71734440 (-) False LOC110490714
XM_036945231.1 mRNA downstream 107285 71687880 ~ 71734440 (-) False LOC110490714
XM_036945222.1 mRNA downstream 107310 71687880 ~ 71734415 (-) False LOC110490714
XM_036945236.1 mRNA upstream 61465 71984728 ~ 72017048 (-) True LOC110490787
XM_036945238.1 mRNA upstream 99554 72022817 ~ 72143317 (-) False LOC110500989
XM_036945244.1 mRNA upstream 99554 72022817 ~ 72150984 (-) False LOC110500989
XM_036945245.1 mRNA upstream 99554 72022817 ~ 72150984 (-) False LOC110500989
XM_036945239.1 mRNA upstream 99554 72022817 ~ 72150986 (-) False LOC110500989
TU1510608 other downstream 603879 71202500 ~ 71237846 (-) False G1323296
TU1510607 other downstream 603879 71202740 ~ 71237846 (-) True G1323296
TU1510499 other downstream 802203 71025251 ~ 71039522 (-) True G1323207
TU1510280 other downstream 1296505 70543356 ~ 70545220 (-) True LOC110490645
TU1510302 other downstream 1304586 70536452 ~ 70537139 (-) True G1323036
TU1512018 other upstream 124701 72047964 ~ 72050171 (-) False LOC110500989
TU1512017 other upstream 133840 72057103 ~ 72150937 (-) True LOC110500989
TU1512083 other upstream 241370 72164633 ~ 72168158 (-) True LOC110490626
TU1512124 other upstream 317285 72240548 ~ 72260352 (-) False G1324464
TU1512208 other upstream 412097 72335360 ~ 72336984 (-) False G1324512

Expression Profile