RNA id: XR_005036203.1


Basic Information

Item Value
RNA id XR_005036203.1
length 528
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC118938842
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72018717 ~ 72019300 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctgaaaccaacatttatttttttttcattttaaaatacaaaatatttagcAATATTATATTATAGAGTAAACCATTTGACAGCCTTTCATGCTCTTTGTGTAGCTTCAACATTTACCAGAATGTTCTTCTATCATTTCATATATTACTTCCTGCAGTCACCAGGGTTTCACACTGCGTCCTGCTATCATTTAGTCTATATGTGAGTCTCAATGGATGAGCATGTTGTTTGTTTAATTTAATTATTTTCTCCTcctactcccctcccctcctcctcctcctccactccttacCCCATAAAGCCTTGAGCTAGCAAAAGTAGTAACCTGACAAATTTGAAAAACAAAGTTGCACAGCAAATGAAAGAGTGAAAACTGTAAAAGGTCTCTCTTGCCCCCATCTTGCAATGCACCCAACACACCTTCAAACCCCCAGGTCAAGCTCTCGTCTGGCGTCTCTATACCCCCTCAAACTAAAACATCTACAGTCAGGTCAAGCTCTCGTCTGGCGTCTCTATACCCCCTCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1511338 lncRNA upstream 80 72017758 ~ 72018637 (+) True G1323882
TU1511334 lncRNA upstream 5835 72012545 ~ 72012882 (+) True G1323879
TU1511321 lncRNA upstream 10093 72007035 ~ 72008624 (+) True G1323873
TU1511320 lncRNA upstream 10480 72007035 ~ 72008237 (+) False G1323873
TU1511316 lncRNA upstream 15867 72001021 ~ 72002850 (+) True G1323871
TU1511344 lncRNA downstream 13973 72033273 ~ 72034362 (+) True G1323886
TU1511352 lncRNA downstream 27103 72046403 ~ 72047343 (+) False G1323894
TU1511353 lncRNA downstream 27621 72046921 ~ 72047343 (+) True G1323894
TU1511359 lncRNA downstream 36100 72055400 ~ 72056378 (+) True G1323899
TU1511364 lncRNA downstream 46675 72065975 ~ 72067581 (+) True G1323904
XR_005036202.1 mRNA upstream 42568 71974610 ~ 71976149 (+) False LOC118938841
XM_036945234.1 mRNA upstream 240014 71764771 ~ 71778703 (+) True LOC110490816
XM_036945232.1 mRNA upstream 255274 71738171 ~ 71763443 (+) False LOC110490815
XR_005036201.1 mRNA upstream 255274 71738171 ~ 71763443 (+) False LOC110490815
XM_036945233.1 mRNA upstream 255274 71738799 ~ 71763443 (+) True LOC110490815
XR_005036204.1 mRNA downstream 34460 72053760 ~ 72054124 (+) True LOC118938843
XM_036945253.1 mRNA downstream 181667 72200967 ~ 72203946 (+) True LOC110490794
XM_036945256.1 mRNA downstream 210319 72229619 ~ 72236599 (+) True si:ch73-139j3.4
XR_005036216.1 mRNA downstream 217630 72236930 ~ 72238063 (+) True LOC118938845
XM_036945259.1 mRNA downstream 218936 72238236 ~ 72241900 (+) True LOC110516855
TU1509976 other upstream 1081572 70936225 ~ 70937145 (+) True G1322763
TU1509919 other upstream 1170773 70843945 ~ 70847944 (+) True G1322725
TU1509218 other upstream 2115059 69900944 ~ 69903658 (+) True G1322161
TU1509173 other upstream 2218855 69798196 ~ 69799862 (+) True G1322119
TU1507783 other upstream 3222736 68794598 ~ 68795981 (+) True G1321053
TU1511441 other downstream 171123 72190423 ~ 72191137 (+) False G1323962
TU1511439 other downstream 171253 72190553 ~ 72191163 (+) True G1323962
TU1511542 other downstream 436917 72456217 ~ 72474419 (+) True LOC110531894
TU1511705 other downstream 722913 72742213 ~ 72826040 (+) False LOC110490361
TU1511749 other downstream 834266 72853566 ~ 72856022 (+) True G1324156

Expression Profile