RNA id: XM_036945244.1


Basic Information

Item Value
RNA id XM_036945244.1
length 5113
RNA type mRNA
GC content 0.54
exon number 31
gene id LOC110500989
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72022817 ~ 72150996 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCAGCAAGAGCGCTGCTCGTTTGACAGCGGCTCGGGAAGAGGGAGCTGGTGCTAGAACCGGAGAACGGAGCAGAGGACCACAGGCTGTGAGGCTGCAGCAGGGAACGAGTCAGAGCACTGCCCGGAGACAGGAGACAAAAACCAACTCATCCTCTTCTATTCCTACAGCTGCGAGAAGAGAGAAAACCCTGTCCACGTTTGCTTTAACAGGTCTGAAGTCCTTCTCAGCAGTCAGAGTGTGTGGATGAATCCAACTGGAGGACGAATCCCTTTGATTGGATCCCCATAGctgactgACTGGTGTGGTGGATACCCTGCTTGACCCCCACATAGTCCTCATTGTGGAGAGCTCTGACCAGGGGGGAAGATTTTTAACGTGACACGCCGGACCATGGACAGGAAGAGGAAATGGGTGCTGAGCagcggtgctttgctggtgatattCCTTGGTCGTATGACCACAGCCTTAGAAGTGCCTCTTGACCCTAAGGTTCTGGAAGGATtaccacAGCCTCCCACTATAACCCACCAGTCCCCTAAGGATTTCATCATCGACCCTCGGGAGAACATCCTCATCTACTGTGAGGCCAAAGGGAAGCCGCATCCCAGCTTTTCCTGGACACGGAATGGGACCCATTTTGACGTGGAGAAGGACTCTAAGGTGTTGATGAAGCCGAGCTCAGGGACGCTGGTCATAGACATCAGTGGGGAGAAGGCTGAGGCCTACGAGGGGATCTACCAGTGTACCGCACGCAATGAGCATGGGACCGCTGTTTCCAACAACATCTTCATCAGACAGTCGAGGTCCCCCTTGTGGtcgaaggagaggaaagaggcaATCATGGTACAGGTGGGAGTGTCTCTGGTGCTGCAGTGTCGACCGCCTGCAGGCCTGCCCCCTCCCATCATCTTCTGGATGGACAACAACTTCCAGCGCCTGCCTCAGAACACGCGTGTGTCCCAGGCGTTAAATGGAGACCTGTACTTCTCTAACGTCCTATTGGACGACACCAGGAACGACTACATCTGTTACGCCCGCTTCCCCCACACACAGACCATCCAGCAGAAACAACCCATCACTGTCAAAGTCCTGGACAACAGTCCATCGGAGGAGCGGCGACCCAGCTTCATGGCTCCTCTGGGGCGGAGCAGCACCCAGATGGCCCTGAGGGGAGGGGTTCTGGAGCTAGAGTGTATCGCTGAAGGACTTCCGACTCCGGAGGTGTCCTGGTATAAGGAGAGTGGCGATCTTCCTAGCAGCCGGATGTCCTTCCACAACTTCCAGAAGACGTTGAAGATCGCAGATGTGATGGAGGCGGACGCCGGGGACTACCGCTGCACGGCCAAGAACAGCCTAGGCTCCGCCCATCACACCATCAAAGTCAACGTCAAAGCGGCTCCGTTCTGGATCAGTGCCCCCAGGAACCTGATCCTGGCCCCGAAGGAGACGGGCATCCTCACCTGCAGAGTCAGTGGAGACCCCAAGCCCCAAATCGCCTGGTCCGTCAACGGAGTCCCCATCGAAGACTCTCCAAAGGACACGAGTCGGAAGGTGGAGGACGACACAGTGATTCTGAGCGACGTCCAGACCGGCTCCAGCGCTGTCTACCAGTGCAACGCCTCCAATGAGTTTGGCTACCTGCTGGCTAATGCTTTTGTCAATGTGCTTGCCGAAGCACCAAGGGTGCTGACTCCCCCCAACAATGTGTACCAGGTCATCACCAACAATCCTGCCTTCCTGGACTGTGCCTCGTTCGGCTCGCCCATACCAACCATCACATGGTTTAAGGAAAGCCAGACAAGTATCCTGAATAGAGACCCATATGTGATCCATAATAACGGTACCTTAGAGATCAACGTAGCCCAGTCCCTGAACAGTGGCAAGTACACCTGTATAGCCTCCAACAACCTGGGAACCAGGGAGAACCATGTCTACTtggaggtcaaagAGCCGACGAGGATCCTGGCCCAGCCAGAGTACATGGTGGTCCAGAGGAACAGGAAGGCCGTGTTTGAGTGTAAAGTTAAACACGACCCCACCCTCATCCCCACCATGAACTGGCTCAAAGACAACGGAGAGCTGCCTGACGACGAGAGGTTCTTGGTGGACACTGACAGTCTGACCATCAACGAAGTGACAGAGGAGGACGAGGGAACCTACACCTGTGTCATGAACACCACCCTGGACCAGGACTCAGCTAGCGCCATGCTCACCGTCGTTGAGGCTACTCCAACTCCTGCTATTGTCTACGAGGAACCAGACCCTCCTACAGACCTGGAGctgactgaccagagagagaggagcgtcCAGCTCACGTGGATACCTGGAGACGAACACAACAGCCCCACACAGAAGTTCCTAGTCCAGTATGAGGACCTGCTCCACCAGGCTGGGGTGTGGCACAACCTGACAGAGGAGGAGGGCACCAAGACCACAGCCCACCTGGACCTGTCCCCCTACGCCTACTACTCCTTCAGGGTTCTGGCCGTGAACCACGTGGGCtacagccagcccagccagccctcCAGACAGTACAGGACCAACCCTGCAGCTCCAGATGTGAATCCAACAGATGTCCATGGTGTTGGAACTGAACATAATAACTTAGTCATCTCATGGAAGGAGCTGACAGGCCTCCAGTCCAATGGACCAGgactacagtacaaggtgaacTGGAGACAGAAGGATGTGGAGGAGGACTGGTTGTCTGAGACCGTGGCTAACGCCTCCAAGTATGTGGTGTCAGGCACGCCCACTTTCGTACCCTACGAGGTCAAAGTTCAGGCGGTGAACGACTACGGAAACGGACCAGCGCCTGAGGCGGTGGTGGGGTATTCTGGAGAGGACGTGCCCATGTCAGCCCCAGAGAGTGTCCAGGTGCTGGTTCAGAACGGGACGCTAGCAGAGGTTCACTGGGAGCCTGTCCTCACCTCCATGGTCAGGGGACGACTCCAGGGCTACAAGGTGTCCTACTGGCGTGAACGTAGCCTCCACCAGGCAGAGGCTCAGCAGGAGGAGCAGCAGGTGTTGCTCTTCAGTGGGAACAGGACTGATGGCAGACTACCAGGCCTCAAACCCTACAGCCTCTATACACTGAACATCAGGGTGGTCAACGGCAAGGGAGAGGGGCCCCCCAGCCCCAACCACAACTTTGAGACCCCAGAGGGAGTCCCTGGTCCTCCTTCCTTCTTGCGTATAAAGAACACCGACATGGACTCTCTGACGCTGGAGTGGGGTCCTCCACAGGACAACAATGGTCGCCTCACCGGCTACACACTCAAATACCAGCCAGtcaacagCTCCAATGAGCTTGGTCCCGTTGAGGAGATGATGTTCCCAGCCAATGAGACCACCGTAATCCTGGCCGACCTCAAGTACAGCACCCGCTATAAGTTCTACTTCAACGCTAAGACCATCAAGGGCTCCGGCCCAACCATCACAGAGGAGGCTGTCACTATCATGGATGAAGCCTTTATTCAGCAACCCATAGTAGATGTGTTCAAAGTGCGTCCGATAGGCCCGGCGTTCACCAACGTAAACTCCTCtgtggtgggagaggagggagcagtgATAAGTTGGGAATACTTTGGACCAGATAAGAATGTGTATGTGGAGTATATTGTAGAAAACAGTAAAGAAGACTGGACAAAAGAGTGTGTAAACGGCAGTAGCGGGTCTCAGACCTATCTGATAAAGGGCTTAAAGCCGGGGACGTCCTATAGGGTTCGGCTGGTAGTTAAAGATCACTCTGAGGCTACCATACACAGTACAGAGGAGCTAGTGATAACGCTGCCAGCAATGAAAAGCGACCAGGTAGACCTAGCCACTCAGGGTTGGTTCATAGGGCTGATGTGTGCCATCGCTCTCCTCATCCTCGTCCTTCTCATCATCTGCTTCATCAAGAGGAACAAGGGAGGGAAAtacccagTGAAAGAAAAAGAGGATGCTCATCAAGACCCAGAGATCCAGCCTATGAAGGATGATGATGGGACGTTTGGAGAGTACAGTGACACGGAGGACCACAAGCCTCTGAAGGGCAGCCGGACGCCGTCCAACGGAACGGTGAAGAGGGACGACAGTGATGACAGCCTGGTGGACTACGGCGAGGGAGGGGATGGGCAGTTCAACGAGGATGGATCCTTCATCGGCCAGTACAGCGGCAAGAAGGAGAAAGACACGCATGAGGGCAACGAGAGCTCCGAGGCCCCCTCGCCGGTCAACGCTATGAACTCCTTCGTCTAGGTAGAGAGACAGTCACCGCTAGCCGATGGCGATGCCATGTCGACTGGCTGCCATGGAAACCGTCACTGTGGTGACCTGACCTGTCACCATGGAGACCTGCCACCATAAGGACGTGTCACCATGGAGACTCATCACCGTGGTGACCTGTCACTGTGGCCACCCATCACCATGGCTACTTCTGTCACACCCTGTCATCTCTCCACAGCCTGCCCCTCCTGCCCGCCAACTCCCCACCCCCCCATCACACTGTGGCTACTCTCACCACCCTCACTATCACACGATGGGATAAACAACTAACCAACCAGAACAGACATGAGAAGAAGAACCTTAGAACCATTTGAAAAAGTAGAAGGAGGGATGTAGGAGcccagaaacagacagagagagatggaggatggaggagaaggcAACACTGACAAGCAGGAAGTGGAGGAATGTATTCCAGGAGCAGACTGGGTTGGTTCTCATCACCCAGACTGCTCCACAAAGTGCTGGAGAGGGCATGTGTGTGTTAGGGCCATTTTAGCTTTTGCAAACGTATATATGATGACATATATAGATCGTTGTCTTTTTGCAAACAATGATATCCATTAGAATATATATTTTCTCCACATCACCCAACATGGCAGTCAACAGTATACATTCTTCCATTCTATACATTCATCTGCTTCTGATTAATATACTGCATGGAATGAATGATATTCTAAACCATTACACACGGAATCATACTGGTGTCTAGTGTGGGAGCAGAGACTCACGTTGACTGACTGTACGCGATGACGCGGTGCACACCTTCAACTACTGGTTATGCCTTTCATCATCTTACCTTTCTACTGTCAGAAGTGTTATATTGGTGTTATAATACGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1512016 lncRNA downstream 1054 72020935 ~ 72021763 (-) True G1324378
TU1512046 lncRNA downstream 39445 71982116 ~ 71983372 (-) False G1324401
TU1512118 lncRNA upstream 2580 72153564 ~ 72153857 (-) True G1324461
TU1512120 lncRNA upstream 3311 72154295 ~ 72154513 (-) True G1324463
TU1512147 lncRNA upstream 4267 72155251 ~ 72156144 (-) False G1324466
TU1512149 lncRNA upstream 4267 72155251 ~ 72156144 (-) False G1324466
TU1512150 lncRNA upstream 4267 72155251 ~ 72156144 (-) True G1324466
XM_036945236.1 mRNA downstream 5769 71984728 ~ 72017048 (-) True LOC110490787
XM_036945235.1 mRNA downstream 99554 71841725 ~ 71923263 (-) False LOC118938840
XM_036945221.1 mRNA downstream 288374 71687880 ~ 71734443 (-) True LOC110490714
XM_036945229.1 mRNA downstream 288375 71687880 ~ 71734442 (-) False LOC110490714
XM_036945231.1 mRNA downstream 288377 71687880 ~ 71734440 (-) False LOC110490714
XM_036945252.1 mRNA upstream 11677 72162661 ~ 72191307 (-) False LOC110490626
XM_036945251.1 mRNA upstream 11677 72162661 ~ 72192809 (-) False LOC110490626
XM_021576856.2 mRNA upstream 59992 72210976 ~ 72225125 (-) False LOC110499794
XM_021576858.2 mRNA upstream 59992 72210976 ~ 72225125 (-) False LOC110499794
XM_036945255.1 mRNA upstream 59992 72210976 ~ 72225125 (-) False LOC110499794
TU1511211 other downstream 99909 71857283 ~ 71922908 (-) True LOC118938840
TU1510608 other downstream 784971 71202500 ~ 71237846 (-) False G1323296
TU1510607 other downstream 784971 71202740 ~ 71237846 (-) True G1323296
TU1510499 other downstream 983295 71025251 ~ 71039522 (-) True G1323207
TU1510280 other downstream 1477597 70543356 ~ 70545220 (-) True LOC110490645
TU1512083 other upstream 13649 72164633 ~ 72168158 (-) True LOC110490626
TU1512124 other upstream 89564 72240548 ~ 72260352 (-) False G1324464
TU1512208 other upstream 184376 72335360 ~ 72336984 (-) False G1324512
TU1512209 other upstream 184376 72335360 ~ 72336984 (-) True G1324512
TU1512282 other upstream 256437 72407421 ~ 72407769 (-) True G1324569

Expression Profile