RNA id: XM_036945251.1


Basic Information

Item Value
RNA id XM_036945251.1
length 4972
RNA type mRNA
GC content 0.52
exon number 9
gene id LOC110490626
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72162661 ~ 72192809 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAAACATTTGTGCCAAACATAAGTAATACAAATGAGTCATGCGGAATGATTTTTCTCCTATTTAAATTCAATTAAATACTGTAGCTGTTCCACAATGAAACGTAATGATTCACACAGGGAGGATTATCTCACataaaatgctgccccctagtgTTACATAGCAGTCAATGCATGCCCTCTCGTGGTTGGTGGTTATCGGTTGACGTGCCTATGAAACAGCCAATCGAGAAGCAGAGCACCGTAACGCGATCTATTGTATATTTACACATTTCCTGTTTTCCTTAGCGAGCAGATCTGTCAATAAAACGCTGACTATTCAGGAGGCAGCTTCATTCCTAGATGACCTATGCTGGACCAGAGCCAAGAGGACTGACCCAGTCTCTAGAGGTTGTCCTGACTGACCCAGTCTCCAGAGGTTGTCCTGACTGACCCAGTCTCCAGAGGTTGTCCTGACTGACCCAGTCTCCAGAGGTTGTCCTGACTGACCCAGTCTCCAGAGGTTGTCCTGACTGACCCAGTCTCCAGAGGTTtaactctctcctgtctctggtGTGAGCTGACGCATGTCGCGGATCAGGAGCACGCTCAACACTGTTACTAAAGCAGTAAGTGGCAGCGACCTCCTCTCCAAGATCTCCCGCCTTAAGCCCAGTGCCGCAGCCGCCCATGCAGAGAAGGTACTGGCCGAAGCGGAGCCTCTGACTCCATCTCCAACTCCGGCAGCTAGTGACCCTTCAGCTGCTGCAATAGACATGAAGCCACCAGAGCAGGATCAGACAGTAGGACAGGACCAGAAcaatggagaggaggggaaggagaatCAGCCACTTCAGCCTTTAGAGAAACCCTTCATGGCCAACGTCAAGCCCAAACAGAGCCTCGCTGCGTCAGTGGCTAACTCCGCCGCATCAGTGGCTATATCCACCGCTAGCTCCTCGTCAGCCATTGCCAAGCAGACGTTACAGCTGTTCCAACCAGAGGCCCTGTCCACCAACATGGACGAGACATACAGCACCCTGTCTCAACACGTCAACGACTACTTTGGGAGTTGTAGTAGTCTATCAACAGGAGATGACAAGAAGCCTCACCATATAAATGTCAATGCTCAAGCATCCACGTCCTCCAAGCCTGCTCTCAGTCTACGCTATCAGAGTACTAAGAGCGGGGACCACATCCCCGTTTCACTACCTGTGGCAGCTGAGACCAAGGCTATCCAGGGCAAGGCAGCTACCCCACAACCGACTCCTCCCCTGGAGGAGGTTAGCTCAACCTCGGGTGTTCCCACCCGAGAGAGCCCTGCCACAGATAGTACTTCCTCTGACCCAGTCACCTATACCTCCACCCCTACCCCCACCCTAACACCCTCTAAAAAAGGTGGGTTTGGGCAGTATCTGTCTGACCCTCGTCCCAATGTTCAGGCATTCTTTGGCAGCTATATAGCACCCTTGGTACCTAGTAAGTTCAGAGCTGATCCCAAGAGTGTCACAGCAGCAGTTGAAGAGAAGACCACGGAGGAGGCTGTGAGGAAGCCTGGAGAGAAGATGGAGACTGAGGAGCAGAAGAAGAATGCTGAAGAGGGGGCCAAGAAACTACtgctgagccagagagagaagATCATAGCGCGGGTGAGTATGGACAACAGGACCAGAGCCTTGGTGCAGGGCATCCAGAAAGCCACAGACATGAATGTCCACACCAGCCGTGTGGAGGAGCTTAGTCTGCATCTTCTGGAGTACCCTGAGACACGCGGTGTGGCCGTCAAgGAGAGGGTGATCCCGTGCCTGTTGCGTCTGAGGCAGACCAGAGACCCCCGGCTCCAGGCTGCAGTGAGAGAGGCCCTGGCCCTGGTGGGATACACAGACCCTGTGAAGGGCCAGGGTATACGGATCCTGGCCATCGATGGAGGGGGGACCAGGGGACTGGTAGCCCTGCAGACCCTACACAAACTGCAGACACTGACAGGCAAACCCATCTACCAGCTGTTTGACTACATCTGTGGGGTCAGCACAGGTGCCATCCTGGCCTTCATGTTGGGGGTGTTCCAGATTCCTCTGGATGATTGTGAGGAACTCTACAGGAAGCTGGGTTCTGATGTGTTCAAACAGAACGTGATCGTGGGAACTGTCAAGATGGGCTGGAGCCACGCCTTCTACGACAGCCAGATCTGGGAGAACATCCTCAAGGAGAGAATGGGAGAAGGCCTCATGGTGGAGACAGCCCGGGATCCAAAATGCCCAAAGGTGTCAGCAGTGAGCACCATAGTGAACAGGGGTCTGCCTCTGAAGGCCTATGTGTTCAGGAACTACAGCATGCTACCAGGGGTCAGGTCCCACTACATAGGAGACTGTAAACACAAGATGTGGCAGGCCATCAGAGCCTCCTCCGCCGCCCCAGGGTACTTCCAGGAGTATACACTGGGAAAAGACCTGCACCAGgATGGTGGTCTCCTCATCAACAACCCCACAGCGTTGGCCATCCATGAGTGTAAGCTGCTGTGGCCCAACACCCCAGTGCAGTGTGTTGTCTCCCTGGGTACAGGTCGCTATGAGACCGTCAACAAGAACAATACCACCTCCACCAGTCTCAAAGCCAAGATCACCAACGTCATCAGCAGTGCCACCGACACAGAGGAGGTCCACATCATGCTGGACGCCCTCCTTCCACCCAACACCTACTTCCGTTTCAACCCCTACATGAGCGAGGACATCCCATTGGACGAGAGCCGCCCGGAGAGGCTGACCTTCCTGCAGGAGGAAGGAACTCGCTACCTGGAGAGGAACGAAGCCAAACTGAACAAGGCAGCGTCGGTGCTGGCTCTGGAGAAGAGCGCCATCCAGAGGCTGGCTGAATGGTGCAAACTGAAGGCCGACATGTACGAGGGCTTGCCCTTCATCTCCAAACTGTAGGGGACGTTTAGAGGTGAAAGGTCAGACAGGCTGAGAGACACTCATTTAGACTGATTATGAAGATAATATAGGAGCCGTAAAGGTCTGACATGTATGAGGGCCCTTCATCTCCAAACTGTAGGAAGCGACCTGCAGAGGTTAAAGTTCAAAAGGCACTGCAGGCGGTAGCTGCTGAGAAACTCATTTAGACCTCAAAATAAACATCATGTGCTTTGATATGactatcagtggaggctggtggaatCATCTATAGGAGGaaaggctcattgtaatggtcggaatggaataaatggaactgagtcaaacgtggtttccatgtgtttgatgtgtttggtaccgttccattgattccattccagccattacaatgatcccatcctcctacagctcctccaaccagcctcctctggacTCCATATCTTCTTGATGCAGATCATGTGATATGACTGCAGATCATGTGATATGACTGCAGATCATGTGATATGACTGCAGATCATGTGATATGACTGCGGTCCATTTGAATTTCTGCTGCTCAGGCAGGATGTTGTTACCTTTGACCTGTGAGAGGTGGTACAGAAGGATGTGTTGTAGTGTTTCTGAAAGGGGTTTGGCTGGTTGGGCTGAAGGAATcaaccttttgactggtcctAAATAAAGTGCCACTGTGATGAGAGCACACAGGCCGTGTTTACGCAGACAGGCCGTGTTTACGCAGGCAGGCCGTGTTTACGCAGGCAGGCCGTGTTTACGCAGGCAGGCCGTGTTTACGCAGACAGGCCGTGTTTACGCAGACAGGCCGTGTTTACGCAGGCAGGCCGTGTTTACGCAGGCAGGCCGTGTTTACGCAGGCAGGCCGTGTTTACTCAGGCAGGCCGTGTTTACTCAGGCAGGCCGTGTTTACGCAGACAGGCCGTGTTTACGCAGGCAGGCCGTGTTTACGCAGGCAGGCCGTGTTTACGCAGGCAGGCcgtgtttacacaggcaggccGTGTTTACGCAGGCAGGCCGTGTTCACGCAGGCAGGCCGTGttcacgcaggcaggcaggccgtgTTTACGCAGGCAGGCCGTGTTTACGCAGGCAGGCCGTGTTCACGCAGGCAGGCCGTGttcacgcaggcaggcaggccgtgttcacgcaggcaggcaggccgtgttcacgcaggcaggcaggccgtgtttacgcaggcaggcaggccgtgtttacgcaggcaggcaggccgtgtttacgcaggcaggcaggccgtgtttacgcaggcaggcaggccgtgtttacgcaggcaggcaggccgtgtttacgcaggcaggcaggccgtgtttacgcaggcaggcaggccgtgTTTACGCAGGCAGGCCGTGTttacgcaggcaggcaggccgtgtttacgcaggcaggcaggccgtgtttacgcaggcaggcaggccgtgtttacacaggcagcccaattctaataTTTTGCCCCCCTAAAAATCAGatattttgccaataattgggctgcctgtgtaaacagccATAATGGTGTGAATGGTAGACAGGCGTAGCCATAATGGTGTGAATGGTAAACAGGCGTAGCCATAATGGTGTGAATGGTAGGCAGGCGTAGCCTACCATTTACTGTTTTGATTTAAGAGTGCAGGTTTTGCAGGGAAGCTGTTTTTGACAACGACCTACTTAACATGTACTGGTATGTCAGAGATTCAGGGTCTGTTATTAGCAACTCATTCTAATGTAATTACTGTAAATATGAATGTTGTAACTGACATTGGTGTCACCTCATTTAAATGCTTCAAACTTGAACTAGGCATGTAAagtagaatggtatcaaacatgtaATTATGCCTTTTTTCACAGACTAATGAAATCATGCACTTTGTAAATTGTCACATTGTTCTTATCTTAAGAGCTCTGTAAGGGATAAAATGTAAATGGTTGGATAGGTGGTTTTGAATAATATTGAAGAGTTGATGGTATTCGCTTTATAATGAAGTTGAACCACCTAATTCCTTTCTCCTGCAGCGGCCCTGTAGGTGGAGGGTGTAGAATGAAAATGTGTTGTTGAAACCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1512157 lncRNA downstream 1266 72161077 ~ 72161395 (-) True G1324469
TU1512154 lncRNA downstream 5416 72156594 ~ 72157245 (-) False G1324467
TU1512155 lncRNA downstream 5690 72156594 ~ 72156971 (-) True G1324467
TU1512149 lncRNA downstream 6517 72155251 ~ 72156144 (-) False G1324466
TU1512172 lncRNA upstream 268 72193077 ~ 72193418 (-) True G1324484
TU1512177 lncRNA upstream 8706 72201515 ~ 72201744 (-) True G1324487
TU1512179 lncRNA upstream 11055 72203864 ~ 72205733 (-) True G1324489
TU1512186 lncRNA upstream 39262 72232071 ~ 72250594 (-) True G1324495
TU1512188 lncRNA upstream 39984 72232793 ~ 72234586 (-) False G1324497
XM_036945246.1 mRNA downstream 11665 72027931 ~ 72150996 (-) False LOC110500989
XM_036945241.1 mRNA downstream 11671 72022817 ~ 72150990 (-) False LOC110500989
XM_036945240.1 mRNA downstream 11672 72022817 ~ 72150989 (-) False LOC110500989
XM_021576856.2 mRNA upstream 18167 72210976 ~ 72225125 (-) False LOC110499794
XM_021576858.2 mRNA upstream 18167 72210976 ~ 72225125 (-) False LOC110499794
XM_036945255.1 mRNA upstream 18167 72210976 ~ 72225125 (-) False LOC110499794
XR_005036205.1 mRNA upstream 18167 72210976 ~ 72225125 (-) False LOC110499794
XR_005036206.1 mRNA upstream 18167 72210976 ~ 72225125 (-) False LOC110499794
TU1512017 other downstream 11724 72057103 ~ 72150937 (-) True LOC110500989
TU1512018 other downstream 112490 72047964 ~ 72050171 (-) False LOC110500989
TU1511211 other downstream 239753 71857283 ~ 71922908 (-) True LOC118938840
TU1510608 other downstream 924815 71202500 ~ 71237846 (-) False G1323296
TU1512124 other upstream 47739 72240548 ~ 72260352 (-) False G1324464
TU1512208 other upstream 142551 72335360 ~ 72336984 (-) False G1324512
TU1512209 other upstream 142551 72335360 ~ 72336984 (-) True G1324512
TU1512282 other upstream 214612 72407421 ~ 72407769 (-) True G1324569
TU1512319 other upstream 287596 72480405 ~ 72481169 (-) False G1324604

Expression Profile