RNA id: TU1512082


Basic Information

Item Value
RNA id TU1512082
length 429
lncRNA type sense_over
GC content 0.47
exon number 1
gene id LOC110490626
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72162661 ~ 72192809 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatggaactgagtcaaacgtggtttccatgtgtttgatgtgtttggtaccgttccattgattccattccagccattacaatgatcccatcctcctacagctcctccaaccagcctcctctggacTCCATATCTTCTTGATGCAGATCATGTGATATGACTGCAGATCATGTGATATGACTGCAGATCATGTGATATGACTGCAGATCATGTGATATGACTGCGGTCCATTTGAATTTCTGCTGCTCAGGCAGGATGTTGTTACCTTTGACCTGTGAGAGGTGGTACAGAAGGATGTGTTGTAGTGTTTCTGAAAGGGGTTTGGCTGGTTGGGCTGAAGGAATcaaccttttgactggtcctAAATAAAGTGCCACTGTGATGAGAGCACACAGGCCGTGTTTACGCAGACAGGCCGTGTTTACGCAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1512080 lncRNA downstream 364 72162810 ~ 72163645 (-) False LOC110490626
TU1512157 lncRNA downstream 2614 72161077 ~ 72161395 (-) True G1324469
TU1512154 lncRNA downstream 6764 72156594 ~ 72157245 (-) False G1324467
TU1512155 lncRNA downstream 7038 72156594 ~ 72156971 (-) True G1324467
TU1512149 lncRNA downstream 7865 72155251 ~ 72156144 (-) False G1324466
TU1512170 lncRNA upstream 17258 72181695 ~ 72182173 (-) True G1324482
TU1512172 lncRNA upstream 28640 72193077 ~ 72193418 (-) True G1324484
TU1512177 lncRNA upstream 37078 72201515 ~ 72201744 (-) True G1324487
TU1512179 lncRNA upstream 39427 72203864 ~ 72205733 (-) True G1324489
TU1512186 lncRNA upstream 67634 72232071 ~ 72250594 (-) True G1324495
XM_036945246.1 mRNA downstream 13013 72027931 ~ 72150996 (-) False LOC110500989
XM_036945241.1 mRNA downstream 13019 72022817 ~ 72150990 (-) False LOC110500989
XM_036945240.1 mRNA downstream 13020 72022817 ~ 72150989 (-) False LOC110500989
XM_021576856.2 mRNA upstream 46539 72210976 ~ 72225125 (-) False LOC110499794
XM_021576858.2 mRNA upstream 46539 72210976 ~ 72225125 (-) False LOC110499794
XM_036945255.1 mRNA upstream 46539 72210976 ~ 72225125 (-) False LOC110499794
XR_005036205.1 mRNA upstream 46539 72210976 ~ 72225125 (-) False LOC110499794
XR_005036206.1 mRNA upstream 46539 72210976 ~ 72225125 (-) False LOC110499794
TU1512017 other downstream 13072 72057103 ~ 72150937 (-) True LOC110500989
TU1512018 other downstream 113838 72047964 ~ 72050171 (-) False LOC110500989
TU1511211 other downstream 241101 71857283 ~ 71922908 (-) True LOC118938840
TU1510608 other downstream 926163 71202500 ~ 71237846 (-) False G1323296
TU1512083 other upstream 196 72164633 ~ 72168158 (-) True LOC110490626
TU1512124 other upstream 76111 72240548 ~ 72260352 (-) False G1324464
TU1512208 other upstream 170923 72335360 ~ 72336984 (-) False G1324512
TU1512209 other upstream 170923 72335360 ~ 72336984 (-) True G1324512
TU1512282 other upstream 242984 72407421 ~ 72407769 (-) True G1324569

Expression Profile