RNA id: XM_036945265.1


Basic Information

Item Value
RNA id XM_036945265.1
length 1605
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC110490625
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72306866 ~ 72315261 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCTCCGAAGTATGTAGCGAACATAGAGCAGCGGAATAATTCAGTTTGAGTCGTTATGCAATGTCAACAAACTCACGCTGAGAAGAAAAACCGGTTAAAGAAATCGGACGATCCATTTTCTGGATTTAATTTAGCCCCTCTCTGAAGTGAACAATTTATCTAAGCTGTTGTTTGTATCATAACCAAATATTAAAATGGGAAGAATTAATATCTGGGTAAAACGGGcgttcatttgtgtgtgtgtcttgataGGGATCATCAGCACCCTCTTGCTGGCCATCACGTTATTTGGACATGGGCACTTCCACCAATCAGAAGAAATAGACAAGATGCTGCCAGGGATAGCAGTTCTGTATGTCCTAGACGCAGCAACCCTGGCCCTTTCAATCTTTGGGGTCTATGGAGCTCGCAAGGAGAAGAAGTGGGCTGTGATTCTGTTTTCTGTAGGTATGTCACTGGCCAGCCTATACCTGTTTGTGAATTGTGTGAAAGGATATCAAGCCAAACACGAGATGGAGGAGTTAAGCAGAAAGGAAGACCTAGCCATGATGCCTCTCAGTGGAGCCAAACAAAACGATATAGAACAGATGTACTACTTTCAAGCTAACTTAAAATGCTGTGGGCTCGTACAAGGCTACCAAGACTGGGGCACAGacatccccctctcctgtctctgttctGATGAGGACTCAACAGACTTTAAATGTGTTGCTCGTGGTAACAATACAAGATTTGTTATTCACTATCCGAACAGTGATATGTCTGATGATGACCACAAGGGATTAATGGATGAACACATGCTGGTATATAAAGAGCCATGTCTTCCCATCCTGATCCCTTTCATGGGCTATGCAATCAGCCTGATGATAGGAACATTAGCAGCACTTAACGCATTATGGGATGTTGGAGTTGCCCTGGCCATCACAATACTCTGCCAGATGAGAAGAAAGGTTGATGTGCCACCTGTGATCTTCACCTCTCAACCACCTCGATACAGAGAGCTGTGTGACACAGCAGAGAGTGTCTGACATGAAATAGTCCTCTTATGAAGGAGACTCAATGCACTAgtctgagtgccagtctgtttgtgccatcatgacAACTCCTGTCACTCATTTGTGTCAAGCCAAACATGACAATGGGTGACAAAGAGTTGACTTGGCAATGACAGACTGGCACGATGGCCTTTATTTagcttggcaagtcagttaggaacaaattcttatttacaatgacggcctaccggggaatagtgggttaaactgccttgttcaggggcagaacgaccgttGGCATTGGCAAgaccacaaacagatctgggatcaggttagCAATGCACTCATATTATGTACATACTCATAACACACATGAAAGGACAACTCGGGACATTATTAGACATTAGACATCTCTACTGTGTTGTCCAAAGTATTACTGTTCAACTGATTATCCATCTGACTGCCAGCAAGAGTCTTCTTATTGGCTGTCAAAGGTTCTGTAAAACCTGTGGTTTGTTTTTCTGTTGTAAATAATTGGTAACCATTTAACCGTTGAAGTGCCTCAGTGTTGGTTACAGTGTCTTGAATAAAGGGACAAGCATCTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1512195 lncRNA downstream 44390 72261990 ~ 72262476 (-) True G1324502
TU1512133 lncRNA downstream 46514 72248673 ~ 72260352 (-) False G1324464
TU1512249 lncRNA upstream 30907 72346031 ~ 72347252 (-) True G1324541
TU1512262 lncRNA upstream 47089 72362213 ~ 72362977 (-) True G1324550
TU1512270 lncRNA upstream 66845 72381969 ~ 72382259 (-) True G1324558
TU1512272 lncRNA upstream 74166 72389290 ~ 72389526 (-) True G1324560
TU1512273 lncRNA upstream 74995 72390119 ~ 72391119 (-) True G1324561
XM_036945262.1 mRNA downstream 25864 72271178 ~ 72281002 (-) True LOC110490622
XM_036945261.1 mRNA downstream 37371 72265690 ~ 72269495 (-) True LOC110499807
XR_005036212.1 mRNA downstream 81741 72210976 ~ 72225125 (-) False LOC110499794
XM_036945275.1 mRNA upstream 106445 72421569 ~ 72426957 (-) True fgl2a
XM_036945280.1 mRNA upstream 166815 72481939 ~ 72493287 (-) False LOC110531900
XM_036945277.1 mRNA upstream 185290 72500414 ~ 72533129 (-) False LOC110531910
XM_036945276.1 mRNA upstream 185290 72500414 ~ 72533130 (-) False LOC110531910
XM_036945279.1 mRNA upstream 197894 72513018 ~ 72533138 (-) False LOC110531910
TU1512124 other downstream 46514 72240548 ~ 72260352 (-) False G1324464
TU1512083 other downstream 138708 72164633 ~ 72168158 (-) True LOC110490626
TU1512017 other downstream 155929 72057103 ~ 72150937 (-) True LOC110500989
TU1512018 other downstream 256695 72047964 ~ 72050171 (-) False LOC110500989
TU1511211 other downstream 383958 71857283 ~ 71922908 (-) True LOC118938840
TU1512208 other upstream 20236 72335360 ~ 72336984 (-) False G1324512
TU1512209 other upstream 20236 72335360 ~ 72336984 (-) True G1324512
TU1512282 other upstream 92297 72407421 ~ 72407769 (-) True G1324569
TU1512319 other upstream 165281 72480405 ~ 72481169 (-) False G1324604
TU1512326 other upstream 165281 72480405 ~ 72481169 (-) False G1324604

Expression Profile