RNA id: XM_036945273.1


Basic Information

Item Value
RNA id XM_036945273.1
length 3165
RNA type mRNA
GC content 0.55
exon number 21
gene id LOC110531894
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72416050 ~ 72481441 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTTTTCAAGGCATTCAACAAAACAGAGAGGCTGAGATTTACTGAAGCATTttgttgtttagctagctagctgacaacAACATTTACAAATAGCTCTACCTCCCAGAGCTAACTTTTATGGCATAATGCTGGATCATTATTTTGACAAACTTGGAGTCACAGGTGAATAAAGGGACTGTTACAGggcCACCATGAGCCAAGCTGGGGAGCAGACCAACCCACCCagtggaggaggtgaggaggagactACTCCTTTATCAGCCCTGGCTCCTGATGCTGCCCTACAGGAGGAGAGCCTGGCCCTGGGCCCCACTCACGTCTCTGCCAGCCCAGCCTTCCAGTGCTTAGACCAGCTGTTCTCTACTGGGAAGATCAGCGGGACCAAAGCAGCGAAGCTCAAAGCCAGTTTCAGCCTGCTCCATGACACCTTGAAAAGCTCTCAGCAGTCAGAGATCCGGCTGCTGCAGGAGGCCAAGCGGTTCAGAGCAGAGCTGGAGCGCCAGCAGAGAGATCTGGAGACGGCTGAGCAGTTCCCTGAGGGGCCGGACACAGAGGTCAGCCGTATGAGACAGCAGCTCCTCAAGTTCCACAATGACCTGCGACAGGCAGAGGAGAGGGACTACCAGATGAACTACCAGCTAGAgtgTCTCACAGAAGAGAAGCTTTGCCTGGAGAAAGAGTATGAGTCTCAACCCAAACCAGTTGAGCTGGAGAAGCGTGCGAAGACCCTGAAGGACAGCAGTGAGGAGCTGAGGAAGGAGGTGTCtcagaggagacaggagatacaCAGCCTGCTGGAGGACATGGAGGCCAGACACAAACTGATGACCAGGGAGCAGAGAGAACTGGACCACAAGAAGGACAGCATAGTAAACAACCAGGCTGAGTTGGCCCAGCTTCTGTCTGTTCCTGGCCAGTTGGGGAAGGAGATTGAGAGGATCAACAGGAAAAAGATGGAGGTTGAGAAAAGTAAGGCGGCCCTAGACGAGCAGCTGTCTGAGGTGGCGGCTCTGCAGAAGATGACAGAGGCCCGCTGTCGCTccctggaggaggagaagagggaggtgaGGAGGCAGGTGGAGGGGCGCAGGGCACACCTGGAGGCTGCCGAGAGGGAACACAGCATGCTGCAGAAAGAGCAGGAGATGACCAAGGAGAAGGAGGTCATTATGATGGGACAGAGAGGTATGCTGGACATCAATACAGGCCACTGCATCATGGAAAGGAAGACCGTGCATGAGAACCTGGCACGAAATCAGCGTGAGAGGGACCGGCAGCTCAGAGAGCTGAAGAAGGTGGAGCTGCAGCTCAAACAGGCCCAGGATGCGCTGGTCTACACTCAGCTACTGCATGACAAGACCAAGTCTACAaGGGATGTCAAACCCAAAAGTGACAGGATTCTGAAGACAAGACAGGAGATACAGTTAGAAGTGGACAAGCTGAAGAGAAACTTGATTCATCAGcaaccAGTAGCGGAGGTGGAGACCCAGCTGATAGAACAGTGTGTGGAACAGGAGCAGGAGCTGATGAGACAGtctcacagacacagagaggagctCCACACCCTCAGCTGTCTGACTCAGATCAAAGCTGACGAGAGAGAGCAGAAGTCCAGGGACCGCCACAGGGCTGAGCAAAGATACCATCGCATCAAGCAAGAGCTGAGAGGCAAGAGTCTGGTGATCCATGAACTCAAGAAGCAGAACCAGGAGGTCCAGTCCAGGCTTGGTGTGTTTGCCAAGCTGTACGACAACATCAAGGGTGATAGGAACAAGTGTATGAACCTGATCCAGATGGCCTCCCAGAGAACGTCTGAGATGAGAGAGAAGTTCAAGATCCTGGACAACGAGATTGAGATCCTCAGAACCAACGCCAGCAAcaaagagaaGCTGCTCCAGAAGTCCCGTCTGAAGCACTTCCACAGCCACACCATCAGAGACAGCCTGAGGAACGATATCTCCAAGGTGACCCTGGTGCTTCATGAGATGAGACAGAAGAGGGAGGAGCAGAAGCTGAACTTGGGCCGGCTGACCCACATGATCAACTACCATGAACAGAACCTGCTACAGATGAGGAAGAGCCACGACAACGCTGTGCAGAGTCGCAATGACAGAGGGGTACAGTTGCTGGAGCGTGAGGAGGAGATGTGTATTTTCTACGAGAAGGTGAATGTTCAGGAGGGCCTGATCAGAGACGGTAACATAGAGATGCAGGCGCTGGAGGAGGAGACGCGCTGCCTGCAGATGATCACCAAGGAAGAAGGAAGACAGACAGCCCTCAGCAGGAAGCTGCTGCCCTGCCAGAGGAGACTGAAGGGAGAGAGCACCATGCTGCAGATACAGcTGTCAGAGTGTAAGGAGCGTATGTTGGAGCTAGAGAAGGCCCTGGAGGATCCAGGACAGGAGAACAGGGCCAGAGAGCTGGAGGGGAATGACCCATCTCCTGTTGAACTCATCCAGAAGATAGAACAGctggaGGTTGGCTTGGCGGAGCGGGAAGAGCTGCTCCTGGAGAAGGACTTGGTGTTTGAGCAGGTGACCCGGCTTTCTCAGCGAATCAGAGCTAAGGCCGAGAACGGCAAGCAGGACACACTGCAGCTAGCCaagaaggtgaatGAGTTGCAGGGCCGTATCAAGGAGTCAACCAGGAGGATGATGGCCGTGGTGTCTGAGTTGTCGATGCGCCAAGCCAGCGCCATGACCCTGCAGCAGGAGCTGAAGGAGAGGGAGCTGTTCCTGGACACCTGCCACCGGCGCCTGGACCAGGGTCTGCCCCCCTCTGAAGACCTGGAGCAGGAGTGGCAACACATCCTCAGGGATGAGCAGCGCAGACAGGCCGACCAGCAGGAGAAAGACAGGctggtggaggaggaggagaggtcccAGCTCCCTAGTGGGGTGTACACCACGGCCGAGGCCCGACCCAACGCCTACATCCCCCTGGGGGACACCCTGCCCCTGCCCAAGCCCTACGGAGCCCTGGCCCCCTTCAAACCCTCCGAGCCCGGCACCAACATCAGACACATTCGCAAGCCTGAACCAAAACCCATTGAGATATAGACCTGGACCAAACCCATtgagatatactgtagacctggacCAAACCCATtgagatatactgtagacctggacCAAACCCATTGAGATATAGACCTGGACCAAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1511563 lncRNA upstream 1081 72414751 ~ 72414969 (+) True G1324046
TU1511560 lncRNA upstream 2595 72413213 ~ 72413455 (+) True G1324044
TU1511555 lncRNA upstream 14032 72401741 ~ 72402018 (+) True G1324039
TU1511552 lncRNA upstream 18197 72397466 ~ 72397853 (+) True G1324036
TU1511547 lncRNA upstream 26811 72388929 ~ 72389239 (+) True G1324033
TU1511587 lncRNA downstream 1263 72481950 ~ 72482708 (+) True G1324070
TU1511593 lncRNA downstream 8710 72489397 ~ 72501480 (+) False G1324076
TU1511594 lncRNA downstream 8710 72489397 ~ 72490148 (+) True G1324076
TU1511590 lncRNA downstream 23653 72504340 ~ 72509190 (+) True G1324073
TU1511589 lncRNA downstream 30266 72510953 ~ 72519481 (+) True G1324072
XM_036945271.1 mRNA upstream 11412 72381871 ~ 72404638 (+) True LOC110518729
XM_036945270.1 mRNA upstream 69134 72340081 ~ 72346916 (+) True LOC110516399
XM_036945267.1 mRNA upstream 80187 72322989 ~ 72335863 (+) True LOC118938846
XM_036945268.1 mRNA upstream 80189 72322986 ~ 72335861 (+) False LOC118938846
XM_036945264.1 mRNA upstream 119746 72287164 ~ 72296304 (+) False LOC110490623
XM_036945281.1 mRNA downstream 70430 72551117 ~ 72734470 (+) False LOC110515111
XM_036945282.1 mRNA downstream 70430 72551117 ~ 72734470 (+) False LOC110515111
XM_036945283.1 mRNA downstream 70430 72551117 ~ 72734470 (+) False LOC110515111
XM_036945284.1 mRNA downstream 70430 72551117 ~ 72734470 (+) False LOC110515111
XM_036945285.1 mRNA downstream 123149 72603836 ~ 72734470 (+) False LOC110515111
TU1511439 other upstream 224887 72190553 ~ 72191163 (+) True G1323962
TU1511441 other upstream 224913 72190423 ~ 72191137 (+) False G1323962
TU1509976 other upstream 1478905 70936225 ~ 70937145 (+) True G1322763
TU1509919 other upstream 1568106 70843945 ~ 70847944 (+) True G1322725
TU1509218 other upstream 2512392 69900944 ~ 69903658 (+) True G1322161
TU1511705 other downstream 261526 72742213 ~ 72826040 (+) False LOC110490361
TU1511749 other downstream 372879 72853566 ~ 72856022 (+) True G1324156
TU1511794 other downstream 380133 72860820 ~ 72865809 (+) False G1324195
TU1511793 other downstream 383926 72864613 ~ 72865809 (+) False G1324195
TU1511795 other downstream 383926 72864613 ~ 72865809 (+) True G1324195

Expression Profile