RNA id: TU1512300


Basic Information

Item Value
RNA id TU1512300
length 1149
RNA type TUCP
GC content 0.46
exon number 3
gene id LOC110531900
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72481939 ~ 72493287 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGGAAAGGCGTCGTTCCCTAAGTCGGAATCGGGCCCATAGCGAATAGCGACTCATTTACCAGTCAACACGATAGGTTTTACACAGGTTTGGTTTTACACAAACTTCTGTTGAAGGCCTGGTGATCGAGGACATGGGGTAACTAgataactgttgttgttgtttccagtCCATGGAGCAGAGGATCTGTCACCTGTGGGATCACCCCATCAGTTCAGCCTGTATCTCCAGAGACTATGTCAGAGGCCTGCTGGAGAAACACGCCAAAACCAAAGGTTCTATGTTCATGGAGAGAGACGAGCCTGGCTTCAGGCCTGAGTTCCTGCCTCTCACCTTCCTGACCAAAATTCTGTTGGATGTGGAAGACCGAGCTCTGAACCCTTTTGAGGAGCAGGAGAATGTGGATGCCAGGTTTGTGGAGGAGACGGCTCTGAAACAGACTCTGATCCTGATGGGCTTCCAGGACAAGTGATGGAGGAAGAGACCGAGGTGAAGGGAGGTGAAGAAAGAGGGGGAGCAGGTCAAGGCTCCCAAGTTTTCACTCAACACTCCATATTCCACTAGTACTCAGAGAGCGGGGACTGTGTGTCAGTGAGCGGGGACTGTGTCAGTGAGCGGGGACTGTGTCAGAGAGCGGGGACTGTGTCAGTGAGCGGGGACTGTGTCAGAGTTCGGGGACTGTGTCAGAGTTCGGGGACTGTTTGAAATTACACTTTAAATGTTGATCACTCAATATTCCAATACATGAGAATCTATGAAAATACATCAGATTCTGATGAACAATGGGTCTGGTGACAATAGTCATCGGTTAAGCATTCATTTGACAGATTTATATTTCTGCCCTCTCTGCCTGTTGCTCAACCCTCCCGCACAGACCAGATGGATGAGGCTCTTACAGTAAGAAGGGAAGTTCTCTGGAAGGTGTCTGAATTACTACAACATGTGTCCTGTATGATGCCTGTATATTTCCATTTCAGAGGAACTGATGCATGGTTAGATTTCAGGAATAACACAGTTGTGTGGAATCCAGGAAATGTGTTGATCAGGTACAATAATAAACAGGAAAAGGGATTTTTGTTTTCATGTTTACACGTGTAAAGCCATATTGTATCAATGAAACTCTAAATAAAATATTTGTTGCATGTTTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1512331 lncRNA downstream 478 72481211 ~ 72481462 (-) True G1324605
TU1512320 lncRNA downstream 771 72480405 ~ 72481169 (-) False G1324604
TU1512325 lncRNA downstream 771 72480405 ~ 72481169 (-) False G1324604
TU1512330 lncRNA downstream 771 72480405 ~ 72481169 (-) True G1324604
TU1512281 lncRNA downstream 74781 72406895 ~ 72407159 (-) True G1324568
TU1512332 lncRNA upstream 1944 72485372 ~ 72497281 (-) True G1324606
TU1512303 lncRNA upstream 43620 72527048 ~ 72528153 (-) False LOC110531910
TU1512334 lncRNA upstream 44897 72528325 ~ 72528635 (-) True G1324608
TU1512351 lncRNA upstream 70478 72553906 ~ 72554360 (-) True G1324620
TU1512377 lncRNA upstream 106601 72590029 ~ 72591064 (-) True G1324646
XM_036945275.1 mRNA downstream 54983 72421569 ~ 72426957 (-) True fgl2a
XM_036945266.1 mRNA downstream 166679 72306866 ~ 72315261 (-) True LOC110490625
XM_036945265.1 mRNA downstream 166816 72306866 ~ 72315124 (-) False LOC110490625
XM_036945262.1 mRNA downstream 200938 72271178 ~ 72281002 (-) True LOC110490622
XM_036945261.1 mRNA downstream 212445 72265690 ~ 72269495 (-) True LOC110499807
XM_036945277.1 mRNA upstream 16986 72500414 ~ 72533129 (-) False LOC110531910
XM_036945276.1 mRNA upstream 16986 72500414 ~ 72533130 (-) False LOC110531910
XM_036945279.1 mRNA upstream 29590 72513018 ~ 72533138 (-) False LOC110531910
XR_005036217.1 mRNA upstream 108234 72591662 ~ 72592173 (-) True LOC118938847
XM_021576788.2 mRNA upstream 251588 72735016 ~ 72737438 (-) True LOC110499730
TU1512319 other downstream 771 72480405 ~ 72481169 (-) False G1324604
TU1512326 other downstream 771 72480405 ~ 72481169 (-) False G1324604
TU1512327 other downstream 771 72480405 ~ 72481169 (-) False G1324604
TU1512282 other downstream 74171 72407421 ~ 72407769 (-) True G1324569
TU1512208 other downstream 144956 72335360 ~ 72336984 (-) False G1324512
TU1512302 other upstream 31242 72514670 ~ 72522178 (-) False LOC110531910
TU1512298 other upstream 45626 72529054 ~ 72533015 (-) True LOC110531910
TU1512583 other upstream 422021 72905449 ~ 72906351 (-) True G1324805
TU1513944 other upstream 1191910 73675338 ~ 73677653 (-) True G1325752
TU1513981 other upstream 1251253 73734681 ~ 73735097 (-) True G1325780

Expression Profile