RNA id: XM_036945279.1


Basic Information

Item Value
RNA id XM_036945279.1
length 4095
RNA type mRNA
GC content 0.47
exon number 22
gene id LOC110531910
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72500414 ~ 72533138 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGGCAGCAAAGGCGGTGAGATAGTCTGAGCCACCGGAGTGATCGCTTGTCCGGCCTATCAGAGCGGGCGTCTCCGCTGTCTGACCCGAGAGGGAGGGCTCTATGAAGAGGGCACAGCGAGCTGTGAATATTGTTCGGTGTGAAGTTGAGTAAATTACTGTATGGCTGCAGATCTTAAGGGAAGTGATTCCCTTTCAAATCACGCCTTCTGCTTTGTTTTCGGTGCGTAAAACACTGCTTAAACGGCTACTGGACTATCATCACAACGTTATTTACAACTATCACATGATGCTGCATTGTATGTCAAGTTGTAACTTCAGGCTATAGGGATGGCGTCTTCCGGATAGTGTGAAATCGCGGAGGCTCTAATTGAAGGCATTTCTTCATAAGTTGTTTGATGCATAATAGACGTGGAAATCAGTAAGTTGTGGAGGAGGTCAACCGCACACATGTTGCAACTAAGCGCAACTTTCGATTTGCAGCAGGATGTGGTGTCAAGTATATTTAAGAAAGAGGCGACTGTAGGAATGATCAAAGAATACTCAGGGATCGTTGACACTCGGATCCTCAACATTGAAAGGGATGGAGGAGTCCTCTACTCCTGGAAAgGGGAAACAGGGACCACCAGGATCGGGAAATACGACCCCAATACCAGACTGAATAAGcTCCTCTACACATTTGACAAGCAGGTGTGTGTCAGCAGCTGTTCTCTGAATAAGGAGGAGACTCTGCTGGCGGTCAGTTTGGCACAGAGGACAAGAACAGAGGAGCGCCTCAGACCAGTTTCACAATGTCTGACCCTCCTCATTGAGATCCATCCCATTAACAACACTAAGGTCCTGAAGGCTGTCGACTGCCGGGTCAGAGTTCAGTTCCTCCATccagacacagagagggactcCGTGCTGGAGAGTCACCTGCTGCTGGTAGCAGAAGATGGCTATGTGGAGCAGCTCCATGTGATGCTGGTCAGACAAGAGGGTTACAGAGTGGTGATGTTGAGCCCAGAGTGCCTGGCCAAAGACAGGGTGGCAGAGGAGTTCAGCTGGGTCCAGTGGGACAGCCAGACACAGAGACTCTTCTACCTCACACACAGGGAAAAAGCTGTGCTGAAATGTGTTCAATTCGGCCATGACCACAACTGTGAGACCTTGGTGAGACTTAGCAGCAGAAATCATTCAATCAGGAACACTTCATGGGTAGTGTTTGATTTCAGGTTTGTTAACCTGGGCTTTGACCATCACCAAGAGACGCAGCAGGAACgggaggagatgaggatggtGGTGATCACCAATATCACAGggagtatgtgtgtgtgttacagccaGCCTGCTTGTGTCAACCAGGAGATCACATACACCATAGTTCTGGTGCACAGAGGCTGCAGTAAAACGTTCTCAGTGGCTCTGGATGGCACCCCTAGTCCATGTAGTAcagatctcctccctctcttcatccctatAGGTTACTATGTGGTAGTCTACCTGTCTGGTCACTTCCTGCACTGCATCAACACCAGGCAACAGGAGCTGCTCTGCCACAGTCTCTTCCTCTCAGGTGTTGATGCAGAGCTGGGTGTGTTGGGATCAGAcagtgtggtgttgtctctacCCGAGTCCTCTCTGCTGGATCTGAACACAGGCAGGATGTACACTGtagacctcaacccctccttcctAATGGACCTACTGCACTGCAGCCACAGGAGACCTGACGCTCAACGCCTGGCTGCCCTGCACTGTCTGCTGCTCTACATGGGACCCAACGCTGCACTAGAACTGAAGATCATAGATTGGATCTGTGACAATGTCATGCCGTTCGACACCTTCGATCAAATTCAGGAATTTATTCTGGCGTCACTGTACAGGATCATCTATAAGAAGTGTCTCAGTCTGGATGAAGTCCTACCCTACTCCTCTGTGTTTGAGAAGAAGAAGGTACCTGAGGCTCTAGACCAGGTCCCCGATGTCACCTGCACCACAGAGCTCCATGCTGAACCAGTGTTCAAAGGAAAGGCCAGGAGTCTCCAGGGTTATTGGGAAGAGCTGCAGTGGAGCACAGAAAAGATGAAGTACTTTGAGGCGGTTCCAAACCCACGATACAGAGCATCTCAGAACCTGCCAGACTGGACCAAGCTGCTAGCTACCCTGAAGTCAAAGAACAAGAAGGCTTCTAACTATCTACGTCACATTGAGGAGAACACTAAACAAGTTCTGTCGATGGTGGACAGCTGGAATCTTGTCCAAATGTTGCTCAACCACGAGATTGGACATCGCTCTACCTCAACCTCACATGGGCCACGCACGGACAACACACAACCtcactctctgtcacacacactgctctctcgctcttgctctgtctcactctctctctgtctctctgtctgtctctcacccgTACACACTCTCTCCCATACTGACCACCATTCATCATTCTCCACACCAATATCCCGACTCACAGAAAAGTTGACTTTTTCCTCTCCCCCCTTCATTGTCCTTGTCATCTTCTCTGACTGTATTGTTTCAGTTTATCCATGGAGATGTCCCTCTGTAATGAAAAGACCATGGAGATGTCCCTCTGTAATGAAGACCATGGATATGTCCCTCTGTAATGAAGACCATGGAGATGTCCCTCTGTAATGAAGACCATGGATATGTCCCTCTGTAATGAAGACCATGGATATGTCCCTCTGTAATGAAGACCATGGATATGTCCCTCTGTAATGAAGACCATGGATATGTCCCTCTGTAATGAAAAGACCATGGAGATGTCCTTCAGTAATGAAAAGACCATGGAGATATCCCTCTGCAATGAAAAGACCATGGAgatgtccctctgtagtgaaaagaccatggagatgtccctctgtagtgaaaagaCCATGGAGATGTCCATATGTAATGAAAAGACCATGGAgatgtccctctgtagtgaaaagaCCATGGAGATGTCCCTCTGTAATGAAAAGACCATGGAgatgtccctctgtagtgaaaagaCCATGGAGATGTCCCTCTGTAATGAAAAGACCATGGAGATGTCCATATGTAATGAAAAGACCATGGAgatgtccctctgtagtgaaaagaccatggagatgtccctctgtagtgaaaagaCCATGGAGATGTCCCTCTGTAATGAAAAGACCATGGAGATGTCCATATGTAATGAAAAGACCATGGAgatgtccctctgtagtgaaaagaccatggagatgtccctctgtagtgaaaagaCCATGGATATGTCCCTCTGTAATGAAGACCATGGAGATGTCCCTCTGTAATGAAGACCATGGATATGTCCCTCTGTAATGAAGACCATGGATATGTCCCTCTGTAATGAAGACCATGGATATGTCCCTCTGTAATGAAGACCATGGATATGTCCCTCTGTAATGAAAAGACCATGGAGATGTCCTTCAGTAATGAAAAGACCATGGAGATATCCCTCTGCAATGAAAAGACCATGGAgatgtccctctgtagtgaaaagaccatggagatgtccctctgtagtgaaaagaCCATGGAGATGTCCATATGTAATGAAAAGACCATGGAgatgtccctctgtagtgaaaagaCCATGGAGATGTCCCTCTGTAATGAAAAGACCATGGAgatgtccctctgtagtgaaaagaCCATGGAGATGTCCCTCTGTAATGAAAAGACCATGGAGATGTCCATATGTAATGAAAAGACCATGGAgatgtccctctgtagtgaaaagaccatggagatgtccctctgtagtgaaaagaCCATGGAGATGTCCCTCTGTAATGAAAAGACCATGGAGATGTCCATATGTAATGAAAAGACCATGGAgatgtccctctgtagtgaaaagaccatggagatgtccctctgtagtgaaaagaccatggagatgtccctctgtagtgaaaagaccatggagatgtccctctgtagtgaaaagaccatggagatgtccctctgtagtgaaaagaCCATGGAGATGTCCCTCTGTAATGAAAAGACCATGGAGATGTCCATATGTAATGAAAAGACCATGGAgatgtccctctgtagtgaaaagaccatggagatgtccctctgtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1512332 lncRNA downstream 15737 72485372 ~ 72497281 (-) True G1324606
TU1512331 lncRNA downstream 31556 72481211 ~ 72481462 (-) True G1324605
TU1512320 lncRNA downstream 31849 72480405 ~ 72481169 (-) False G1324604
TU1512351 lncRNA upstream 20768 72553906 ~ 72554360 (-) True G1324620
TU1512377 lncRNA upstream 56891 72590029 ~ 72591064 (-) True G1324646
TU1512344 lncRNA upstream 65805 72598943 ~ 72599533 (-) True G1324616
TU1512395 lncRNA upstream 79424 72612562 ~ 72613167 (-) True G1324656
TU1512397 lncRNA upstream 81270 72614408 ~ 72614907 (-) True G1324658
XM_036945280.1 mRNA downstream 19731 72481939 ~ 72493287 (-) False LOC110531900
XM_036945275.1 mRNA downstream 86061 72421569 ~ 72426957 (-) True fgl2a
XM_036945266.1 mRNA downstream 197757 72306866 ~ 72315261 (-) True LOC110490625
XM_036945265.1 mRNA downstream 197894 72306866 ~ 72315124 (-) False LOC110490625
XM_036945262.1 mRNA downstream 232016 72271178 ~ 72281002 (-) True LOC110490622
XR_005036217.1 mRNA upstream 58524 72591662 ~ 72592173 (-) True LOC118938847
XM_021576788.2 mRNA upstream 201878 72735016 ~ 72737438 (-) True LOC110499730
XM_036945315.1 mRNA upstream 321884 72855022 ~ 72896464 (-) False LOC110490677
XM_036945312.1 mRNA upstream 321884 72855022 ~ 72899308 (-) False LOC110490677
XM_036945313.1 mRNA upstream 321884 72855022 ~ 72915316 (-) False LOC110490677
TU1512300 other downstream 29590 72481940 ~ 72483428 (-) True LOC110531900
TU1512319 other downstream 31849 72480405 ~ 72481169 (-) False G1324604
TU1512326 other downstream 31849 72480405 ~ 72481169 (-) False G1324604
TU1512327 other downstream 31849 72480405 ~ 72481169 (-) False G1324604
TU1512282 other downstream 105249 72407421 ~ 72407769 (-) True G1324569
TU1512583 other upstream 372311 72905449 ~ 72906351 (-) True G1324805
TU1513944 other upstream 1142200 73675338 ~ 73677653 (-) True G1325752
TU1513981 other upstream 1201543 73734681 ~ 73735097 (-) True G1325780
TU1514093 other upstream 1469309 74002447 ~ 74002749 (-) True G1325863
TU1514169 other upstream 1635005 74168143 ~ 74212866 (-) True LOC110513406

Expression Profile