RNA id: TU1512303


Basic Information

Item Value
RNA id TU1512303
length 879
lncRNA type sense_over
GC content 0.43
exon number 3
gene id LOC110531910
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72500414 ~ 72533138 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtgtgtccagacttttgactggtactgtaggtaacACACTGTAGGCTCTGACCTGGGCAACAACACCTTAAACTAACATGCTCTGTTTCTTTTGAATTGTGAAGAAGAATGCAGAAATTCCTCCTGATAACGCAATAACGAcctcccttctttctctgtcAGGAAAAAGCTGTGCTGAAATGTGTTCAATTCGGCCATGACCACAACTGTGAGACCTTGTTTGAGCTCGTACTGGAGGTGCCCTCTAACCCTTTCAGCTGTATGAGGTTTGTTAACCTGGGCTTTGACCATCACCAAGAGACGCAGCAGGAACgggaggagatgaggatggtGGTGATCACCAATATCACAGGCAGGTTTTGGTTGAACATAAACTGATTGACCTCCGTACTGAACTGTGTTGATAATGTTCTATGCTCGGAGAACATTCCTCTTTCATTGAGTTTGTCGTTACTTTTTGTTTGACATGGGACGTGAATGGAAACAGAGGGTAAGTGCTGTAGCTACTGTGATCTAGATGAACTGTGTCACTCCTTGATCAATGGACAGTTCAGTCCACCACCAGCACAATCACACTCCCTTCACAGAGCCCAGATTTAATACAACTTCTCAATTCTCAAGATTGCATTAGTCAAGCTGCACAATTGGAAATGCTGCAGGCTTCCCAATCGTAAAAATAATGAGTGTTTCTTTGAAAGGCCTATCAAATCTAAAGATGGTTGACGACGGCCCGGGGCCACGATCATAATCACTTCACTGTGCTACTTATTCAAAATGACATTCAAGATTCAACCAATAAAACACTGTTGCTTTTAATAAGACCCCAATCAATACCACATTGTTAAAATGCTAtccttctgcttcttcttctggtTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1512332 lncRNA downstream 29767 72485372 ~ 72497281 (-) True G1324606
TU1512331 lncRNA downstream 45586 72481211 ~ 72481462 (-) True G1324605
TU1512320 lncRNA downstream 45879 72480405 ~ 72481169 (-) False G1324604
TU1512325 lncRNA downstream 45879 72480405 ~ 72481169 (-) False G1324604
TU1512330 lncRNA downstream 45879 72480405 ~ 72481169 (-) True G1324604
TU1512334 lncRNA upstream 172 72528325 ~ 72528635 (-) True G1324608
TU1512351 lncRNA upstream 25753 72553906 ~ 72554360 (-) True G1324620
TU1512377 lncRNA upstream 61876 72590029 ~ 72591064 (-) True G1324646
TU1512344 lncRNA upstream 70790 72598943 ~ 72599533 (-) True G1324616
TU1512395 lncRNA upstream 84409 72612562 ~ 72613167 (-) True G1324656
XM_036945280.1 mRNA downstream 33761 72481939 ~ 72493287 (-) False LOC110531900
XM_036945275.1 mRNA downstream 100091 72421569 ~ 72426957 (-) True fgl2a
XM_036945266.1 mRNA downstream 211787 72306866 ~ 72315261 (-) True LOC110490625
XM_036945265.1 mRNA downstream 211924 72306866 ~ 72315124 (-) False LOC110490625
XM_036945262.1 mRNA downstream 246046 72271178 ~ 72281002 (-) True LOC110490622
XR_005036217.1 mRNA upstream 63509 72591662 ~ 72592173 (-) True LOC118938847
XM_021576788.2 mRNA upstream 206863 72735016 ~ 72737438 (-) True LOC110499730
XM_036945315.1 mRNA upstream 326869 72855022 ~ 72896464 (-) False LOC110490677
XM_036945312.1 mRNA upstream 326869 72855022 ~ 72899308 (-) False LOC110490677
XM_036945313.1 mRNA upstream 326869 72855022 ~ 72915316 (-) False LOC110490677
TU1512302 other downstream 4870 72514670 ~ 72522178 (-) False LOC110531910
TU1512300 other downstream 43620 72481940 ~ 72483428 (-) True LOC110531900
TU1512319 other downstream 45879 72480405 ~ 72481169 (-) False G1324604
TU1512326 other downstream 45879 72480405 ~ 72481169 (-) False G1324604
TU1512327 other downstream 45879 72480405 ~ 72481169 (-) False G1324604
TU1512298 other upstream 901 72529054 ~ 72533015 (-) True LOC110531910
TU1512583 other upstream 377296 72905449 ~ 72906351 (-) True G1324805
TU1513944 other upstream 1147185 73675338 ~ 73677653 (-) True G1325752
TU1513981 other upstream 1206528 73734681 ~ 73735097 (-) True G1325780
TU1514093 other upstream 1474294 74002447 ~ 74002749 (-) True G1325863

Expression Profile