RNA id: TU1512298


Basic Information

Item Value
RNA id TU1512298
length 857
RNA type TUCP
GC content 0.47
exon number 8
gene id LOC110531910
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72500414 ~ 72533138 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGAATATTGTTCGGTGTGAAGTTGAGTAAATTACTGTATGGCTGCAGATCTTAAGGGAAGTGATTCCCTTTCAAATCACGCCTTCTGCTTTGTTTTCGGTGCGTAAAACACTGCTTAAACGGCTACTGGACTATCATCACAACGTTATTTACAACTATCACATGATGCTGCATTGTATGTCAAGTTGTAACTTCAGGCTATAGGGATGGCGTCTTCCGGATAGTGTGAAATCGCGGAGGCTCTAATTGAAGGCATTTCTTCATAAGTTGTTTGATGCATAATAGACGTGGAAATCAGTAAGTTGTGGAGGAGGTCAACCGCACACATGTTGCAACTAAGCGCAACTTTCGATTTGCAGCAGGATGTGGTGTCAAGTATATTTAAGAAAGAGGCGACTGTAGGAATGATCAAAGAATACTCAGGGATCGTTGACACTCGGATCCTCAACATTGAAAGGGATGGAGGAGTCCTCTACTCCTGGAAAgGGGAAACAGGGACCACCAGGATCGGGAAATACGACCCCAATACCAGACTGAATAAGcTCCTCTACACATTTGACAAGCAGGTGTGTGTCAGCAGCTGTTCTCTGAATAAGGAGGAGACTCTGCTGGCGGTCAGTTTGGCACAGAGGACAAGAACAGAGGAGCGCCTCAGACCAGTTTCACAATGTCTGACCCTCCTCATTGAGATCCATCCCATTAACAACACTAAGGTCCTGAAGGCTGTCGACTGCCGGGTCAGAGTTCAGTTCCTCCATccagacacagagagggactcCGTGCTGGAGAGTCACCTGCTGCTGGTAGCAGAAGATGGCTATGTGGAGCAGCTCCATGTGATGCTGGTCAGACAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1512334 lncRNA downstream 419 72528325 ~ 72528635 (-) True G1324608
TU1512303 lncRNA downstream 901 72527048 ~ 72528153 (-) False LOC110531910
TU1512332 lncRNA downstream 31773 72485372 ~ 72497281 (-) True G1324606
TU1512331 lncRNA downstream 47592 72481211 ~ 72481462 (-) True G1324605
TU1512320 lncRNA downstream 47885 72480405 ~ 72481169 (-) False G1324604
TU1512351 lncRNA upstream 20891 72553906 ~ 72554360 (-) True G1324620
TU1512377 lncRNA upstream 57014 72590029 ~ 72591064 (-) True G1324646
TU1512344 lncRNA upstream 65928 72598943 ~ 72599533 (-) True G1324616
TU1512395 lncRNA upstream 79547 72612562 ~ 72613167 (-) True G1324656
TU1512397 lncRNA upstream 81393 72614408 ~ 72614907 (-) True G1324658
XM_036945280.1 mRNA downstream 35767 72481939 ~ 72493287 (-) False LOC110531900
XM_036945275.1 mRNA downstream 102097 72421569 ~ 72426957 (-) True fgl2a
XM_036945266.1 mRNA downstream 213793 72306866 ~ 72315261 (-) True LOC110490625
XM_036945265.1 mRNA downstream 213930 72306866 ~ 72315124 (-) False LOC110490625
XM_036945262.1 mRNA downstream 248052 72271178 ~ 72281002 (-) True LOC110490622
XR_005036217.1 mRNA upstream 58647 72591662 ~ 72592173 (-) True LOC118938847
XM_021576788.2 mRNA upstream 202001 72735016 ~ 72737438 (-) True LOC110499730
XM_036945315.1 mRNA upstream 322007 72855022 ~ 72896464 (-) False LOC110490677
XM_036945312.1 mRNA upstream 322007 72855022 ~ 72899308 (-) False LOC110490677
XM_036945313.1 mRNA upstream 322007 72855022 ~ 72915316 (-) False LOC110490677
TU1512302 other downstream 6876 72514670 ~ 72522178 (-) False LOC110531910
TU1512300 other downstream 45626 72481940 ~ 72483428 (-) True LOC110531900
TU1512319 other downstream 47885 72480405 ~ 72481169 (-) False G1324604
TU1512326 other downstream 47885 72480405 ~ 72481169 (-) False G1324604
TU1512327 other downstream 47885 72480405 ~ 72481169 (-) False G1324604
TU1512583 other upstream 372434 72905449 ~ 72906351 (-) True G1324805
TU1513944 other upstream 1142323 73675338 ~ 73677653 (-) True G1325752
TU1513981 other upstream 1201666 73734681 ~ 73735097 (-) True G1325780
TU1514093 other upstream 1469432 74002447 ~ 74002749 (-) True G1325863
TU1514169 other upstream 1635128 74168143 ~ 74212866 (-) True LOC110513406

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00055727 True 2341 mRNA 0.46 23 NC_007115.7 20198496 ~ 20222182 (-)