RNA id: XM_021576788.2


Basic Information

Item Value
RNA id XM_021576788.2
length 2012
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110499730
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72735016 ~ 72737438 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAATAGGTATTTATGTTGGGCGGGATCTTACCTTGCGTGCAAGTAAAGGGAAAAAATCAGAAATCAGCCGTTCAAACTAGCTAATATTTACGAACGGTCATGTAGCTAATATTGATGATGGATTATCGAAAATTATTTAACGGTGGATACGGAGACAGAAACTCTGATCATCACTAAACACAACATCAGGGACCGGCAACCTCTATTTCCACTGTAGGGGTACTACCAGTGTACCTGTGGGGCCACCATGTCTCTTGCTCAGAGAGTCCTCCTCACCTGGATCTTCACCCTGGCCTTCCTCATCATGCTCGTCCTCAAACTAGATGGCAAAGTCCACTGGAACTGGTTCCTCACCTTTCTACCCGTATGGATCTTCGACGGCATCCTCCTCCTCATGTTACTCGTCAAGATGGTCGCCAGGTGTAAAGCGGGACACGACCCTCGTAACGGCTCCCAGGACCTGAAGAAGAAGGCCTGGTACCTGGCGTCCATGCTGCTGAAGCTGGGCTTCTGTCTGACGCTGTGCGCCCGGCTGGAGAAGCTTACCCATATCAAGCTCACCTTTGTGTGTATTCCTCTGTGGTGCATGTTGCTGGGAGCCATGGTGGAGCTGGGCTATAACATCTTCCCCGAGAGGAGAGAGGCATGAGCGATGGATTGAGGAGAATGGAAAGGAGGAGGCTCTTCAGAGAAGGCTGGAAGGAACACACACAAACCTAATTCTTTAGTGTGGTTATTTCAGCTGTTTGCGAAATCACAAACTCTCCTTCGTTATGACATGAAGTGTTATCCCGTTGACCAAGCTTTGCTCTCGTGCCAACAGTACTGCTTATCAGAGAACAGATCAGAGACTGTGCCTTCAGGAGGTTATAAAACGGATGTAAATGGTACAGGTCATGTAGATGTCAGATAAACTAATACAATCTAGCAAAGACATGTCACATTGCTAGCTAAGGATTTCCAGACATTTTCCTTGACGTCAGCATCTTTTGTGTTGTAAAATCTTTCATACTTTGTGGAACGACAAATGATTGTCGTAGTGTTTGGAAGACGGGGCTCTTCCTATGTAAAGCCATTCAGTTTAAATGTGATCTACCTGTAGTGTTTGGAAGATGGGGCTCTTCCTATGTAAAGCCATTCAGTGTTTTGTGCCATTCAGTTAAAATGTGATCTACCTGTAGTGGTACTGTCTCCATTTAATTTTCACCATTTGAATAGTTGATTTTGACATCAATCTgcatattatttattattttcctTTCAGTATTGTGTGAATGGATGTCACTGTTCCAAACTAAAACATGCTCTGATTTTGTTTATGGTGCCTTGTGAGCTGTTGACTCCAGCATCAGAATAGATGAGCAGGCAAGTCTCAATGCACTACCAGTTGTATTGGAAAGATGGCAGTAGCAGCATGTTGGCCTACTTGTGTTCAATGCAATCCTCGACAGTGCAATAATCAGTTGTAATACTGGGCTGTTTTGAGGATGTATCAAAGAACTTTACAACTTGCACAGACTGAACAGCCTCATTCCATGTACTCTCAGTTCAGTAAATGTGTACTACTAACATAAAATGTCTCAACCATGAtgcatttgggggggggggtatttatcCCTCACTCTGAAAGGAGACTGAATGTGTTCTCCGTGCCTGCCCTTTTTTTAAAGGACACATTTGTCctgacattcacacacacatgcataaacaTCTTCCTCCACGGTCTGTGTGTCAGGGCTACACTCTCCCATTGGGCTGCCTCCCAACCCCTCAGGTCCTTCTGTATGCCACACCCTCTTTGGAtagccccatagggctctggtcaacagtagtgcactatagaaaacagggtgccgtttgggacacaccCTGTGACTGGACCAAGAGTTTGAGGCTCGCCCATCACACTAATCTGATTATCTGACATTCAAACCATGTGGGGCCAGGGCAGTCTGTCATAGCTTCTAGCGAGGTCTCTGTTGGGCGTGTACTGCTACTGCACATTCTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1512453 lncRNA downstream 19781 72714641 ~ 72715235 (-) True G1324706
TU1512409 lncRNA downstream 100450 72633533 ~ 72634566 (-) True G1324665
TU1512403 lncRNA downstream 107660 72625943 ~ 72627356 (-) True G1324662
TU1512402 lncRNA downstream 111153 72623540 ~ 72623863 (-) True G1324661
TU1512397 lncRNA downstream 120109 72614408 ~ 72614907 (-) True G1324658
TU1512481 lncRNA upstream 21728 72759166 ~ 72760129 (-) False G1324730
TU1512482 lncRNA upstream 21728 72759166 ~ 72760129 (-) True G1324730
TU1512504 lncRNA upstream 48026 72785464 ~ 72823893 (-) True G1324749
TU1512505 lncRNA upstream 48285 72785723 ~ 72786124 (-) True G1324750
TU1512559 lncRNA upstream 131870 72869308 ~ 72869829 (-) True G1324790
XR_005036217.1 mRNA downstream 142843 72591662 ~ 72592173 (-) True LOC118938847
XM_036945279.1 mRNA downstream 201878 72513018 ~ 72533138 (-) False LOC110531910
XM_036945276.1 mRNA downstream 201886 72500414 ~ 72533130 (-) False LOC110531910
XM_036945277.1 mRNA downstream 201887 72500414 ~ 72533129 (-) False LOC110531910
XM_036945280.1 mRNA downstream 241729 72481939 ~ 72493287 (-) False LOC110531900
XM_036945315.1 mRNA upstream 117584 72855022 ~ 72896464 (-) False LOC110490677
XM_036945312.1 mRNA upstream 117584 72855022 ~ 72899308 (-) False LOC110490677
XM_036945313.1 mRNA upstream 117584 72855022 ~ 72915316 (-) False LOC110490677
XM_036945316.1 mRNA upstream 117584 72855022 ~ 72915316 (-) False LOC110490677
XM_036945314.1 mRNA upstream 117584 72855022 ~ 72916241 (-) False LOC110490677
TU1512298 other downstream 202001 72529054 ~ 72533015 (-) True LOC110531910
TU1512302 other downstream 212838 72514670 ~ 72522178 (-) False LOC110531910
TU1512300 other downstream 251588 72481940 ~ 72483428 (-) True LOC110531900
TU1512326 other downstream 253847 72480405 ~ 72481169 (-) False G1324604
TU1512583 other upstream 168011 72905449 ~ 72906351 (-) True G1324805
TU1513944 other upstream 937900 73675338 ~ 73677653 (-) True G1325752
TU1513981 other upstream 997243 73734681 ~ 73735097 (-) True G1325780
TU1514093 other upstream 1265009 74002447 ~ 74002749 (-) True G1325863
TU1514169 other upstream 1430705 74168143 ~ 74212866 (-) True LOC110513406

Expression Profile