RNA id: XR_005036220.1


Basic Information

Item Value
RNA id XR_005036220.1
length 5056
RNA type mRNA
GC content 0.49
exon number 20
gene id LOC110490361
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72742193 ~ 72850175 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTCACGTCGGCTTGATGCAAGACAAGCTGGATGTATTTATACAGTAAACGGATTGGAGgtcagggagagaaagggaaaataGATCACATCAAAATCAGCGAAACTGTGAATCGAAGACTATCATATAGATAACGTCCTAATATTCATAAAATCACCGGTCTGCAGCAACCGGAGTCAACGAGCCTAAAATGCCCCAGCTGGTGACCTCTGACATGTAAATGGCGTCCAAAGTCAGAGATGCTGTGGTGTGGTACCAGAAGAAGATTGGTGCTTATGACCAACAGATATGGGAGAAGTCTGTTGAACAAAGAGAAATCAAGTTTATTAGACTGGGCCTGAGGAACAAGCCAAAGAAGACAGGCCATGTGAAAGCAGACCTCATTGATGTGGACCTAGTGAGAGgttcTGCTTTTGCCAAGGCCAAGCCTGAGTCTCCCTGGACGTCTCTGACCAGGAAGGGTCTCGTCAGGGTGGTGTTGTTCCCCTTCTTCTTCAGATGGTGGATCCAGGTCACCTCCAGagccatcttcctcctcctcctcctcctctacctgctTCAAGtggctGCTGCAGCGTTATTCTTCACCATTCCCCAGCCCCACAGTATCCCGACCACAGAGGTGTTTGGGGCGATATGGCTGATGCTGTTACTGGGGACAGTGCACTGCCAGATCGTCTCCACACGCACCCCCAAacccaccagcagcagcagctctgGCAAGAGAAGAAGGCGTCTAAGGAAGGCAGCTCACTTGGATGTACATAGGGAAGGAGATGGCTCTAGCACCACTGATAACACCCGGGAGGGCGGCCCACACTGCCACGGTGCCGCCACCGGCTCACCTTACAGCCTGTGCATCGCTCTCTTCCGAGATTTCTGGCATGATATCTGTAAAGCGCGgTCGAAGAAGTCCAAGCTGTCCATAGACAAGTCCACAGAGACAGATAATGGCTATGTGTCTCTGGACGGGAGGATAACCTGTAAGAGTAGTGAGGAGGGGCTACAGCTCCATGATGGAGGGTCTCACCACTGTGACCTGCTGCTGAGGTCAGACGAGACGTGTTGGGCCGCACCCCCGCCTCTCaacacactgctgctgcccccCGTCGCCAAGGTAAACAACAAGGAGACCCAGAGCCGTGGTGTGGGTGTGGAGAACATGTCTGATGAGGCGTCTAGTGAGGAGGATCCTGAAGCGTCCTACACCGCCATCCGTAGGGGCGTAGAGCGCGTCAGCAGCGACTGCACGCTGCGCAACAGGAAACCACATCACTACAAGAAACACTACGCCATCAACACTGAGGTGGGTGACCTCCACACTACCCAGgaGACTCCTAAGTCCGGTACCAGCTGTAGTTCTCGGTGCTCCAGCCTGCGGACCCAGGACTCAGAGAGCACCAGACACGAGTCAGAGACAGAGGACCTGCTGTGGGAGGACTTCCTGCACTGTGCTGAGTGTCGCTCCTCATGCACcagcgagacagagggagagggagctgcAGTCTGCCCTGCTACCAAGAAGGAGTACAGAGATGACCCCTTTCACCAGTTGTGTCCTCTACAGGGTCATACGTGGCTACACAGCACCAACCCAGGTCTGGAGCGGGTCAGTGCCATCGTCTGGGAGGGGAACGACTGTAAGAAGGCTGACATGTCTGTCCTGGAGATCAGCGGTATGATCATGAACAGGGTCAACCTGTACACCCCAGGTATTGGCTACCAGGTCTTTGGTAACCTGGTGTCAGTGACTCTGGGCCTGACGCCCTTCGCCTACAGGCTGTCTCAGTACAAGGACCTGGAACAGCTGACGCAGCTCTCAGCCAATGAGCTCATCTCTGTGGCGTTCGGCTCCTCCTCCGACGTCATGGTGATCACCATGGTAACGCTCAGCTTCATGGTGCGCGTCTGTCTCATCTGGCTCTTCTTCTTCCTGCTCAGCGTGGCCGAGAGGACAtacaaacagAGGCTGCTATTCGCCAAGCTGTTTGGTCACCTGACGTCGGCACGGCGAGCCAGGAAGTCGGAGGTGCCTCACTTCCGTCTGAAGAAAGTCCAGAACATTAAGATGTGGCTCTCTCTGCGCTCATATCTCAAGAGAAGGGGTCCTCAGCGGTCGGTGGATGTGATCGTGTCCTCTGccttcctcctcaccctctccgtCGTCTTCATCTGCTGTGCTCAGGTCAGCttgCTCCATATCCACCACACCTTCCTGGAGTGTCACTATAACTGGGAGCTGGTGATCTggtgttcctctctgtctctcttcctgctcCGCTTTGTTACCCTGGGCTCAGAGACCAGCAAGAAgtacagcaacacctccatctTACTGACAGAACAGATTAATCTGTACCTGAAGATGGAGAAGAAACCAAACAAGAAGGAGGATTTGACATTAGTCAACAACGTACTGAAGCTGGCCACCAAGCTGTTGAAGGAGTTGGATGCTCCGTTCAGGCTGTATGGTCTGACGATGAACCCTCTGCTCTACAACATCACCCAGGTGGTCATCCTGTCTGCTGTGTCCGGGGTCATCAGTGACCTACTGGGCTTCAACCTGAAGCTCTGGAAGATCAAATCATGACAGTAAGCTGATCAGGTCACAGCTGGCTCTGGAAGATGTGATACATTCTCTCACCACACAGGGGCGCTGTTGTCCTTTCGCTCACGGACTGACTGGGCTTCCCTGTATCTATGGTCTGACGGACAAACAGCCCCATTCTCAGAGTTCATAACGGAGTGCTTACATTTCACTTGTGCAATTCAAGATATATTTATTTTACCCtttcagtatttttttattttgttgttgttggaaaaagttacaaaatgttattttaattAAGCTATACAGGTTTTGTGTTCTCAGAGGGACGGGATCAAAACACAGCAAGATGACAATTCAGTTAAAAAGGTAAAAGAGTTCCATCCCTTCAGACTAGTAAGGACAATGTGCATTATAATGCAGCTGTTTAGTTTGTTGACTGTGACACACAAACGCAGTCATTTCACTGTGAGAACTGCAACGAGTTGTTGTTTCCGATCGTAGACGGACTGTAATAATCATCATGTGTTTTAAAgcctacatacacacaaacaggttGTACTTTCTGGTCAATTCAATGTaggctttttttgttgttgcttttgaCGACAACAACAGTACACCAAAGTTCAGAATAGACGAAcaatgtttctgtgtgtttggcgtTTCTAATGATAAGCTAAGTGACGGCTGTAGTGGAGAGATAGAGGCAGGataaaacacaacacatcactcaaATGATTGGTGAGAAAATAGGTGAGGTACTGTACTGGCTAGATgggaggtactgtactgtattggctAGATgggaggtactgtactgtattggctAGATgggaggtactgtactgtattggctAGATgggaggtactgtactgtattggctAGATgggaggtactgtactgtattggctAGATGGGAGGTACTGTACTGGCTGGATGGGAGGTAATGTACTGTACCGGCTAGATGGGAGGTACTGTACTGCCTAGATGGGAGGTACTGTACTGGCTAGATGGGAGGTACTGTACTGGCTAGATGGGAGGTACTGTACTGGCTGGATGGGAGGTACTGTACTGGCTGGATGGGAGAACTATACTGGCTAGATggggtgtactgtactgtattggctAGACGGGAGGTACTGTACTGGCTGGATGGGAGGTACTATACTGGCTAGATGggtggactgtactgtactggctaGATGGGAGGTACTGTATTGGCTAGAAgggatgtactgtactgtactgggtggATGGGATGTACTGTACTGGCTAGATgggaggtactgtactgtattggctAGAAGGgatgtacagtactatactgggtgGATGGGAGGTACTGTACTGGGTGGATGGGAATATGTAAACCTAGCCAACATATCTGGGTTAGTATTCTGTATGTCAAATTGAGACATCCAGGCCCGCTAGCCCAAACTAAACGATGTGTGACTGAACATGGGTAACTAAGTTACTCGTATAATGATCATTTTGGGGGGGTGCTTATGTTTGTCCTGGTACACACTTGTACAAGTCTGTAATGAAAATGTGTTTCTTACATACTGAGACCCTGAGGGAGTGGGGTCGCGACCTTTTATGGTGATACCATTCAGTATTGGCTTCTGTACTCCCAACCCTATTTTGAAAAACCAGACACAGTGACGTGTGCAGTCTGGTTGAAATACTGCTATTCAGGCCTGTGAGCCGTCATCACAACCTCGTCAACATGTtgctttttctcgccctccttcCCTTGTTTCCTGTTTTACGTTGCATGGTTTTCTCACGGAGCATTTGAGTTGTTTCAGTGGTTAGACTGTATTTCAAGCAATAACTCGTAGCTCAACACACAACGTGTTTGTATTATAGTTAGAACAAAGAGGTCCCGGGTCTTAGTCGCTGTTCACACAGTCGATGTTCGTCGCTACATTTCAGAATGCCTGAAAAGGTGCACTTTAAAGTAGTGTATAGAAACAATGTCACATGTTTCAATGTCACACACAAACCATTGTAGTTGTTATTGCTTGGTACTTGTTGGCGTGGCTCAGTCTGTGTGAAGATGACCAAAGTGCTTTTTATTTGCTGGATAAAGCTGTATTATTaacacaaaataactgtttgGGTTTCATATTATTGGAAATGCTTTAAGAAAACATGGTGTTGCCTCATCTtttcctttgttgttgttgttgttgtccctcGTGTTTTGTGGTTGCGAGAGAAAAGACAGTCACTTGAGTCTGAAAAATGTCTTTAGAAAATGACTCTGAACCTGTCTGCCATCCTGATCCCTAGTgcaccagagccctggtcaaaagtagtgcactacgtagggaatagggtgacgtTTTTGCGTTGTGATTCCGTTTTCAAAAGGAAGTCTGCATATTTATGTTGAAGAGAAGAAAAACTACTTTTAGTGAGCTGGTCTGTTTCCTCAGTTCTAGGTGTTTATAAGGAAAATAAAAATGGACATTGTTGTGTCACTCATTCAACTTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1511775 lncRNA upstream 11196 72729820 ~ 72730998 (+) True G1324179
TU1511768 lncRNA upstream 35749 72706128 ~ 72706445 (+) True G1324172
TU1511689 lncRNA upstream 59039 72682937 ~ 72683155 (+) True G1324153
TU1511621 lncRNA upstream 107481 72633535 ~ 72634713 (+) True G1324102
TU1511617 lncRNA upstream 108731 72631735 ~ 72633463 (+) True LOC110515111
TU1511825 lncRNA downstream 19033 72869208 ~ 72870083 (+) True G1324222
TU1511830 lncRNA downstream 21292 72871467 ~ 72874048 (+) True G1324224
TU1511863 lncRNA downstream 84937 72935112 ~ 72936085 (+) True G1324252
TU1511874 lncRNA downstream 100690 72950865 ~ 72951079 (+) True G1324263
TU1511882 lncRNA downstream 103782 72953957 ~ 72954167 (+) True G1324269
XM_036945281.1 mRNA upstream 7724 72551117 ~ 72734470 (+) False LOC110515111
XM_036945330.1 mRNA downstream 322045 73172220 ~ 73253907 (+) False LOC118938849
XM_036945331.1 mRNA downstream 408348 73258523 ~ 73536948 (+) False LOC110517131
XM_036945335.1 mRNA downstream 408348 73258523 ~ 73536948 (+) False LOC110517131
XM_036945332.1 mRNA downstream 408349 73258524 ~ 73536947 (+) False LOC110517131
XM_036945333.1 mRNA downstream 408349 73258524 ~ 73536947 (+) False LOC110517131
TU1511542 other upstream 267775 72456217 ~ 72474419 (+) True LOC110531894
TU1511439 other upstream 551031 72190553 ~ 72191163 (+) True G1323962
TU1511441 other upstream 551057 72190423 ~ 72191137 (+) False G1323962
TU1509976 other upstream 1805049 70936225 ~ 70937145 (+) True G1322763
TU1509919 other upstream 1894250 70843945 ~ 70847944 (+) True G1322725
TU1511749 other downstream 3391 72853566 ~ 72856022 (+) True G1324156
TU1511794 other downstream 10645 72860820 ~ 72865809 (+) False G1324195
TU1511793 other downstream 14438 72864613 ~ 72865809 (+) False G1324195
TU1511795 other downstream 14438 72864613 ~ 72865809 (+) True G1324195
TU1511851 other downstream 55535 72905710 ~ 72906089 (+) True G1324240

Expression Profile