RNA id: TU1511705


Basic Information

Item Value
RNA id TU1511705
length 737
RNA type TUCP
GC content 0.51
exon number 6
gene id LOC110490361
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72742193 ~ 72850175 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAGACAAGCTGGATGTATTTATACAGTAAACGGATTGGAGgtcagggagagaaagggaaaataGATCACATCAAAATCAGCGAAACTGTGAATCGAAGACTATCATATAGATAACGTCCTAATATTCATAAAATCACCGGTCTGCAGCAACCGGAGTCAACGAGCCTAAAATGCCCCAGCTGGTGACCTCTGACATGTAAATGGCGTCCAAAGTCAGAGATGCTGTGGTGTGGTACCAGAAGAAGATTGGTGCTTATGACCAACAGATATGGGAGAAGTCTGTTGAACAAAGAGAAATCAAGGGCCTGAGGAACAAGCCAAAGAAGACAGGCCATGTGAAAGCAGACCTCATTGATGTGGACCTAGTGAGAGgttcTGCTTTTGCCAAGGCCAAGCCTGAGTCTCCCTGGACGTCTCTGACCAGGAAGGGTCTCGTCAGGGTGGTGTTGTTCCCCTTCTTCTTCAGATGGTGGATCCAGGTCACCTCCAGagccatcttcctcctcctcctcctcctctacctgctTCAAGtggctGCTGCAGCGTTATTCTTCACCATTCCCCAGCCCCACAGTATCCCGACCACAGAGGTGTTTGGGGCGATATGGCTGATGCTGTTACTGGGGACAGTGCACTGCCAGATCGTCTCCACACGCACCCCCAAacccaccagcagcagcagctctgGCAAGAGAAGAAGGTGGGGAGaagggctggagatggagggagggatgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1511775 lncRNA upstream 11215 72729820 ~ 72730998 (+) True G1324179
TU1511768 lncRNA upstream 35768 72706128 ~ 72706445 (+) True G1324172
TU1511689 lncRNA upstream 59058 72682937 ~ 72683155 (+) True G1324153
TU1511621 lncRNA upstream 107500 72633535 ~ 72634713 (+) True G1324102
TU1511617 lncRNA upstream 108750 72631735 ~ 72633463 (+) True LOC110515111
TU1511821 lncRNA downstream 8395 72834435 ~ 72834710 (+) True G1324219
TU1511703 lncRNA downstream 21302 72847342 ~ 72850169 (+) False LOC110490361
TU1511741 lncRNA downstream 21302 72847342 ~ 72850169 (+) True LOC110490361
TU1511825 lncRNA downstream 43168 72869208 ~ 72870083 (+) True G1324222
TU1511830 lncRNA downstream 45427 72871467 ~ 72874048 (+) True G1324224
XM_036945281.1 mRNA upstream 7743 72551117 ~ 72734470 (+) False LOC110515111
XM_036945282.1 mRNA upstream 7743 72551117 ~ 72734470 (+) False LOC110515111
XM_036945283.1 mRNA upstream 7743 72551117 ~ 72734470 (+) False LOC110515111
XM_036945284.1 mRNA upstream 7743 72551117 ~ 72734470 (+) False LOC110515111
XM_036945285.1 mRNA upstream 7743 72603836 ~ 72734470 (+) False LOC110515111
XM_036945308.1 mRNA downstream 473 72826513 ~ 72828880 (+) False LOC110499728
XM_036945309.1 mRNA downstream 473 72826513 ~ 72828880 (+) False LOC110499728
XM_036945310.1 mRNA downstream 473 72826513 ~ 72828880 (+) False LOC110499728
XM_036945303.1 mRNA downstream 473 72826513 ~ 72829520 (+) False LOC110499728
XM_036945304.1 mRNA downstream 473 72826513 ~ 72829520 (+) False LOC110499728
TU1511542 other upstream 267794 72456217 ~ 72474419 (+) True LOC110531894
TU1511439 other upstream 551050 72190553 ~ 72191163 (+) True G1323962
TU1511441 other upstream 551076 72190423 ~ 72191137 (+) False G1323962
TU1509976 other upstream 1805068 70936225 ~ 70937145 (+) True G1322763
TU1509919 other upstream 1894269 70843945 ~ 70847944 (+) True G1322725
TU1511749 other downstream 27526 72853566 ~ 72856022 (+) True G1324156
TU1511794 other downstream 34780 72860820 ~ 72865809 (+) False G1324195
TU1511793 other downstream 38573 72864613 ~ 72865809 (+) False G1324195
TU1511795 other downstream 38573 72864613 ~ 72865809 (+) True G1324195
TU1511851 other downstream 79670 72905710 ~ 72906089 (+) True G1324240

Expression Profile