RNA id: TU1511741


Basic Information

Item Value
RNA id TU1511741
length 2047
lncRNA type sense_over
GC content 0.42
exon number 4
gene id LOC110490361
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72742193 ~ 72850175 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGAGTTGGATGCTCCGTTCAGGCTGTATGGTCTGACGATGAACCCTCTGCTCTACAACATCACCCAGGTGGTCATCCTGTCTGCTGTGTCCGGGGTCATCAGTGACCTACTGGGCTTCAACCTGAAGCTCTGGAAGATCAAATCATGACAGTAAGCTGATCAGGTCACAGCTGGCTCTGGAAGATGTGATACATTCTCTCACCACACAGGGGCGCTGTTGTCCTTTCGCTCACGGACTGACTGGGCTTCCCTGTATCTATGGTCTGACGGACAAACAGCCCCATTCTCAGAGTTCATAACGGAGTGCTTACATTTCACTTGTGCAATTCAAGATATATTTATTTTACCCtttcagtatttttttattttgttgttgttggaaaaagttacaaaatgttattttaattAAGCTATACAGGTTTTGTGTTCTCAGAGGGACGGGATCAAAACACAGCAAGATGACAATTCAGTTAAAAAGGTAAAAGAGTTCCATCCCTTCAGACTAGTAAGGACAATGTGCATTATAATGCAGCTGTTTAGTTTGTTGACTGTGACACACAAACGCAGTCATTTCACTGTGAGAACTGCAACGAGTTGTTGTTTCCGATCGTAGACGGACTGTAATAATCATCATGTGTTTTAAAgcctacatacacacaaacaggttGTACTTTCTGGTCAATTCAATGTaggctttttttgttgttgcttttgaCGACAACAACAGTACACCAAAGTTCAGAATAGACGAAcaatgtttctgtgtgtttggcgtTTCTAATGATAAGCTAAGTGACGGCTGTAGTGGAGAGATAGAGGCAGGataaaacacaacacatcactcaaATGATTGGTGAGAAAATAGGTGAGGTACTGTACTGGCTAGATgggaggtactgtactgtattggctAGATgggaggtactgtactgtattggctAGATGGGAGGTACTGTACTGGCTGGATGGGAGGTAATGTACTGTACCGGTAAACGATGTGTGACTGAACATGGGTAACTAAGTTACTCGTATAATGATCATTTTGGGGGGGTGCTTATGTTTGTCCTGGTACACACTTGTACAAGTCTGTAATGAAAATGTGTTTCTTACATACTGAGACCCTGAGGGAGTGGGGTCGCGACCTTTTATGGTGATACCATTCAGTATTGGCTTCTGTACTCCCAACCCTATTTTGAAAAACCAGACACAGTGACGTGTGCAGTCTGGTTGAAATACTGCTATTCAGGCCTGTGAGCCGTCATCACAACCTCGTCAACATGTtgctttttctcgccctccttcCCTTGTTTCCTGTTTTACGTTGCATGGTTTTCTCACGGAGCATTTGAGTTGTTTCAGTGGTTAGACTGTATTTCAAGCAATAACTCGTAGCTCAACACACAACGTGTTTGTATTATAGTTAGAACAAAGAGGTCCCGGGTCTTAGTCGCTGTTCACACAGTCGATGTTCGTCGCTACATTTCAGAATGCCTGAAAAGGTGCACTTTAAAGTAGTGTATAGAAACAATGTCACATGTTTCAATGTCACACACAAACCATTGTAGTTGTTATTGCTTGGTACTTGTTGGCGTGGCTCAGTCTGTGTGAAGATGACCAAAGTGCTTTTTATTTGCTGGATAAAGCTGTATTATTaacacaaaataactgtttgGGTTTCATATTATTGGAAATGCTTTAAGAAAACATGGTGTTGCCTCATCTtttcctttgttgttgttgttgttgtccctcGTGTTTTGTGGTTGCGAGAGAAAAGACAGTCACTTGAGTCTGAAAAATGTCTTTAGAAAATGACTCTGAACCTGTCTGCCATCCTGATCCCTAGTgcaccagagccctggtcaaaagtagtgcactacgtagggaatagggtgacgtTTTTGCGTTGTGATTCCGTTTTCAAAAGGAAGTCTGCATATTTATGTTGAAGAGAAGAAAAACTACTTTTAGTGAGCTGGTCTGTTTCCTCAGTTCTAGGTGTTTATAAGGAAAATAAAAATGGACATTGTTGTGTCACTCATTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1511821 lncRNA upstream 12632 72834435 ~ 72834710 (+) True G1324219
TU1511798 lncRNA upstream 69409 72777465 ~ 72777933 (+) True G1324197
TU1511790 lncRNA upstream 75760 72771271 ~ 72771582 (+) True G1324193
TU1511783 lncRNA upstream 83624 72762475 ~ 72763718 (+) True G1324187
TU1511781 lncRNA upstream 93585 72753287 ~ 72753757 (+) True G1324185
TU1511825 lncRNA downstream 19039 72869208 ~ 72870083 (+) True G1324222
TU1511830 lncRNA downstream 21298 72871467 ~ 72874048 (+) True G1324224
TU1511863 lncRNA downstream 84943 72935112 ~ 72936085 (+) True G1324252
TU1511874 lncRNA downstream 100696 72950865 ~ 72951079 (+) True G1324263
TU1511882 lncRNA downstream 103788 72953957 ~ 72954167 (+) True G1324269
XM_036945303.1 mRNA upstream 17822 72826513 ~ 72829520 (+) False LOC110499728
XM_036945304.1 mRNA upstream 17822 72826513 ~ 72829520 (+) False LOC110499728
XM_036945305.1 mRNA upstream 17822 72826513 ~ 72829520 (+) False LOC110499728
XM_036945306.1 mRNA upstream 17822 72826513 ~ 72829520 (+) False LOC110499728
XM_036945307.1 mRNA upstream 17822 72826513 ~ 72829520 (+) True LOC110499728
XM_036945330.1 mRNA downstream 322051 73172220 ~ 73253907 (+) False LOC118938849
XM_036945331.1 mRNA downstream 408354 73258523 ~ 73536948 (+) False LOC110517131
XM_036945335.1 mRNA downstream 408354 73258523 ~ 73536948 (+) False LOC110517131
XM_036945332.1 mRNA downstream 408355 73258524 ~ 73536947 (+) False LOC110517131
XM_036945333.1 mRNA downstream 408355 73258524 ~ 73536947 (+) False LOC110517131
TU1511705 other upstream 21302 72742213 ~ 72826040 (+) False LOC110490361
TU1511542 other upstream 372923 72456217 ~ 72474419 (+) True LOC110531894
TU1511439 other upstream 656179 72190553 ~ 72191163 (+) True G1323962
TU1511441 other upstream 656205 72190423 ~ 72191137 (+) False G1323962
TU1509976 other upstream 1910197 70936225 ~ 70937145 (+) True G1322763
TU1511749 other downstream 3397 72853566 ~ 72856022 (+) True G1324156
TU1511794 other downstream 10651 72860820 ~ 72865809 (+) False G1324195
TU1511793 other downstream 14444 72864613 ~ 72865809 (+) False G1324195
TU1511795 other downstream 14444 72864613 ~ 72865809 (+) True G1324195
TU1511851 other downstream 55541 72905710 ~ 72906089 (+) True G1324240

Expression Profile