RNA id: XM_036945346.1


Basic Information

Item Value
RNA id XM_036945346.1
length 1997
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC118938851
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 73890918 ~ 73902131 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTCCAAGTGTCCCAGAAATTCAACAACGCCTTCTTTTGCATTGTCAAACGATCTCTGGTCTGTGAAATATACTCCTTGATTTACAGAAAGAAGGATTTACAATCCAGACTGGTAGGAATATCTTTACGCACTCATTAAAGTTCATCCACGGGGGTTTTTTTCTGCGTGTTTAATCTACAGCCGGGGCAGGACGAGTGGCGCGCCAGTAACAGACGTTAAGCGTAACAGTGACACCAAGATGAAGGAAACGCCATCGTTGATAGACAGCGAGGTGTTCCTGGCCTTCTCTACCTACGCCACTGTCGTCGTCCTCAAGATGATGCTGATGTCTCCTATGACTGCATACTTCCGCTTCACGAGAAAGTGTTTTGCCAACATGGAAGACACAGGGATGGCTAAGACTCCAGAGGACAAGAAGAGGATGCTGAGAGTTGACCCGGATGTGGAACGTGTGAGAAGaTGCCACCAGAACGACCTGGAGAACATCATCCCGTTCGTAGTGATTGGTCTGCTGTATACCCTGACGGGGCCAGACCTCTCCACTGCTCTGCTCCACTTCCGGGTGTTTGTTGGTTCCAGGCTCTTCCACACGGTGGCCTACGTCCTCCCCCTGCCCCAGCCCAGCAGAGGTCTAGCTTGGATGGTTGGCATGGGCGCTACCTTCTCCATGGCATACAGAGTGCTAAGCTCAACGCATCTCTGAAGAGGCGATCAATCAATTAATAATTCATCAGATTGATTGATTCAAAGTTTTCAGATGGCCTAAAATAGTCCTCGGGACACTCTACCTCTGAGGAGACACTCACACATTTATTAGACCTGGGTCAAATAGGCTACATAATGTTAAATACGTTTGAGAGTGCTTGATTGTACTTGGAGTTTGCACTTCTGGAACGATTCTATTGGTTCTGTTGTATCAGACAGACTAACTATACATTCTCTGCACGTTTTGTTTTTAACTCAGCACTGAATTTGATctgtgcaacaaaaaaaaagtattaataTCAGCAAAAAATAATTAAACTAAACGTAGGGCTCGATTCAATCTATTTCACGGAAGGTCAGTGCTAGCGCGCAGTAGACATTAAACGGTAACGGTCCCGCGGAAACTCCATTCAAGGTAAACGCTGCATACATTCGGAAACTCCATTTAACATTTCAAGTGCACCAGAGCGCTGACTTTAGGCGATACGGATTGAATGGAGCCCTGAACTAAAATCAAGTGTAGTTCAGTATCCGATACCGCATGTAATCTGGCTATTTTTACCCACATCAAATCACCAGTTTATTCgtcgcgtacacagatttgcagatgttatcgcatgTGCTGTAAAATGATAGTGTTGCTAGGTCCAATAGTGCAGTCATACCGAGCAatgcattaaaaataaataaaacatacacACATGACCCGGTCTGTCTGGTTGTCTGACACACAGCCCTACAGACCCGGTCTGTCTGGTTGTCTGACACACAGCCCTACAGACCCGGTCTGTCTGGTTGTCTGACACACAGCCCTACAGACCCGGTCTGTCTGGTTGTCTGACACACAGCCCTACAGACCCGGTCTGTCTGGTTGTCTGACTGACTGCAAACACCTATTTTATATCTTAGACATTTTTTTTGCATCTGATGTGATAATCTAATGTTTATAAATTATTAAATTCGGGTTTTGGGAATTAAAGTTGAATTAAAAATGTGTGTGGCGGGGATTATTGTTTGATTTTAATTGAAATAGGGCCTTTGAAGTAGGCTACAAATACCAGAGATATTTTGCTAATTGGCTAATGAATATGACCTTATACTTGATCTAATTCTGTATCTTTTTAAATTCTGTATATGGTTTTAGATCTacatatgatatgatatgtttaCTAGGCCACGTATCTGTAATGCTACTGATTGGTTTGCTTTGTTCGTTCCATTTTCTAAGCCAATCAGGGATTGTCCCTTTTTTAATGCTTTCCACCTGTAAATAAACGAACGATCTCTAGAA

Function

GO: NA

KEGG:

id description
K00799 GST, gst; glutathione S-transferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1514047 lncRNA downstream 12205 73878440 ~ 73878713 (-) True G1325821
TU1514046 lncRNA downstream 14031 73876382 ~ 73876887 (-) True G1325820
TU1514044 lncRNA downstream 24935 73859229 ~ 73865983 (-) True G1325818
TU1514033 lncRNA downstream 84209 73805543 ~ 73806709 (-) True G1325812
TU1514028 lncRNA downstream 86302 73804030 ~ 73804616 (-) True G1325810
TU1514052 lncRNA upstream 3978 73906109 ~ 73908019 (-) True G1325825
TU1514079 lncRNA upstream 45454 73947585 ~ 73947824 (-) True G1325849
TU1514082 lncRNA upstream 49912 73952043 ~ 73952248 (-) True G1325852
TU1514083 lncRNA upstream 53257 73955388 ~ 73955870 (-) True G1325853
TU1514063 lncRNA upstream 62266 73964397 ~ 73964824 (-) True G1325833
XM_036945343.1 mRNA downstream 124 73884283 ~ 73890794 (-) False mgst1.1
XM_036945594.1 mRNA downstream 552557 73337025 ~ 73338361 (-) True LOC118938934
XM_036945325.1 mRNA downstream 747948 72959216 ~ 73142970 (-) False LOC110490803
XM_036945561.1 mRNA upstream 18322 73920453 ~ 73929800 (-) True LOC118938901
XM_036945349.1 mRNA upstream 72803 73974934 ~ 73985501 (-) False LOC110527628
XM_036945357.1 mRNA upstream 265067 74167198 ~ 74198789 (-) False LOC110513406
XM_036945356.1 mRNA upstream 265067 74167198 ~ 74213125 (-) False LOC110513406
XM_036945354.1 mRNA upstream 265067 74167198 ~ 74213127 (-) False LOC110513406
TU1513981 other downstream 155821 73734681 ~ 73735097 (-) True G1325780
TU1513944 other downstream 213265 73675338 ~ 73677653 (-) True G1325752
TU1512583 other downstream 984567 72905449 ~ 72906351 (-) True G1324805
TU1512298 other downstream 1357903 72529054 ~ 72533015 (-) True LOC110531910
TU1512302 other downstream 1368740 72514670 ~ 72522178 (-) False LOC110531910
TU1514093 other upstream 100316 74002447 ~ 74002749 (-) True G1325863
TU1514169 other upstream 266012 74168143 ~ 74212866 (-) True LOC110513406
TU1514163 other upstream 323285 74225416 ~ 74234814 (-) True LOC110511321
TU1514158 other upstream 473170 74375301 ~ 74395568 (-) True G1325915
TU1514307 other upstream 703240 74605371 ~ 74607316 (-) True LOC118938855

Expression Profile