RNA id: XM_036945402.1


Basic Information

Item Value
RNA id XM_036945402.1
length 3788
RNA type mRNA
GC content 0.52
exon number 8
gene id LOC110518764
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 75520301 ~ 75547039 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCcgtccccatagaagaacccaTCAGCAGCAGTGGGCTGGCTTAACTGGGACTTTAGAGCTGACCTATCCCCTCCGTGTTAGTTCCCGGTGTCCCTCTGCAAGAGGTAGGAGGGGGCAGAGGCAGGCACTCAGGAGCCTCCTCAACACACTACCTCCCACTAGCCACCCTGCTCGACGGCCGACATGACCAGCACTCCGTAGATATGAGGACAACAGCAGCATCCTGAGCTGACAAAGAAACACTTCATGGAAGGAACAAGAGGCTGGCCCTCGGATCAGCAGCACTTCCTTAAGATGATGCACCTCCCCAGGATCACGAAGAGAACCCAGTCACCCCACAGAGAGACCGTTTCCCCTGTCCTCTCATACTACTCAGAGCCGGCCTACCTGCAGCACCGTAAGGATGTGACTAGAGATCTGGCCCCGCTGCCTGGTGCAACGAGAAGAGGAGCCCTGGATGAGGAAGACCAGGAAGAGACGCTGAGCCTACGGAGCATGCCCAGTATGAGAAGCACCCTGAGTCACGCCTCAAAGGTGAAAAGGTCACGGGGCTTCCCGAAGAGACACACCATCCCCAAGCTCAGACTGCCCCCTGTTACTAAGATTCATCCTGACCCCAGAGCCAGTCTGGAATTGAGGGGTACTGGCTACCTGAGATGTTCCAGACTTCCACCCATCATCAAATCTACCAGAACCCATGAGCCTCTGCACCAGGAAAGACCCCCAGGTCCAGCTGGGTACAGGCCTGAGAAGAAGGGAGATGTTCCCTCTGGACTACCAGAAAAGAAGACTGTTGGTCTGAAGAAGCAGGGAGATGTTCCCTCTGGACTACCAGAGAAGAAGACTGTTGGTCTGAAGAAGCAGGGAGATGTTCCCTCTGGACTACCAGAGAAGAAGACTGGTGGTCTGAAGAAGCAGGGAGATGTTCCCTCTGGACTACCAGAGAAGAAGACTGTTGGTCTGAAGAAGCAGGGAGATGTTCCCTCTGGACTACCAGAGAAGAAGACTGTTGGTCTGAAGAAGCAGGGAGATGTTCCCTCTGGACTACCAGAGAAGAAGACTGTTGGTCTGAAGAAGCAGGGAGATGTTCCCTCTGGACTACCAGAGAAGAAGACTGTTGGTCTGAAGAAGCAGGGAGATGTTCCCTCTGGACTACCAGAGAAGAAGACTGTTGGTCTGAAGAAGCAGGGAGATGTTCCCTCTGGACTACCAGAGAAGAAGACTGTTGGTCTGAAGAAGCAGGGAGATGTTCCCTCTGGACTACCAGAGAAGAAGACTGTTGGTCTGAAGAAGAGTTTTAATAATGAGGACCTCCTCAAAGTACCTGTTGTGACCATGTCCAAGATAATTTCTGATCCACCTCCAACTGAGACCCAACGCATCACGTTCCACAGCCCCGCGCTGCAGGCCATGTACCCGATAACCCCTGACAACGAAACGCAAACCAGGAAGCCAGTGGAAGATAGAAAACCCCCGTATCCCAGAGTCCTCTCTTCTACATCCACCTGCGCTATATCTAACACCATCGGTCCTGAGAAAGTATACAGATTCCAGCCACACCTTCTGAGAGATAACCCCCCTCCATACTCCTCTGAGTGGACCGATCCAAAGGCTTTAACCCAAGGAAGGACTGAGTGGACTGAACCAAGGGCTCCAAcccaggggaggggagagatgctGTTGATCAGACTGAGCATCACATGGTCCAAGGCTGAGAACAACAGCAACCTGAGACAGTCCCAGTCTCAGCTCCAGCGTTACCCCATCTGTCCCCTGAAACCAGCCCTGAGACTACCCATCTCTAACACAAGGAGGCTGAGGGACTGGGGGAGACGGGGGACGACGTTGGGGTGtctgtgggaggaggaggaggggtgtgtccCACCCCCGGTCCCAGTCCAGCCTCAGTTACTGGAATCCTTTACAGGGTTCAAAGAGCACCTCTGTCACCAGcttctccacccccccacccccctggcTCAGCTCCTGGAGAAGGCCTCAGAGGGAGACCATATAGACACACAggcagaccgaccgacagacagaacagtagacagacagtatagacagacaggtagacagaccggtagatagacagGTAATGTCCCAGGTTCCTCAGGTGCATACCCTCCAGACCCCCTGCAGTACTCTGCCAGCCCATACCGTGCAGCTGTCTGGATCTCAGGGTCCAGGAGGGGCTCTACCCAGAATCCCCATGACCAGACCAACTCCTTCCCCCAAGCTccccctccttcactcacacagTAAGAACAGACATTCAGCATAGATAGATGGTCTGTTTTACATGGAACTGTCACTCTACAGGCCTGTTCTACCACGGAACCGTCACTCTACAGGCCTGTTCTACCACGGAACCGTCAATCTACAGGCCTGTTCTACCACGGAACCGTCAATCTACAGGCCTGTTCTAACTCGGAACCGTCAATCTACAGGCCTGTTCTACCACGGAACCGTCAATCTACAGGCCTGTTCTACCACGGAACCGTCAATCTACAGGCCTGTTCTACCACGGAACCGTCACTCTACAGGCCTGTTCTACCACGGAACCGTCACTCTACAGACCTGTTCTAACACGGAACCGTCACTCTACAGGCCTGTTCTACCACGGAACCGTCAGTCTACAGGCCTGTTCTACCACGGAACCGTCAATCTACAGGCCTGTTCTACCACGGAACCGTCACTCTACAGGCCTGTTCTACCACGGAACCGTCAATCTACAGGCCTGTTCTACCACGGAACCGTCACTCTACAGGCCTGTTCTACCACGGAACCGTCACTCTACAGACCTGTTCTAACACGGAACCGTCACTCTACAGGCCTGTTCTACCACGGAACCGTCACTCTACAGGCCTGTTCTACCACGGAACCGTCACTCTACAGACCTGTTCTAACACGGAACCGTCACTCTACAGGCCTGTTCTACCACGGAACCGTCACTCTACAGGCCTGTTCTACCACGGAACCGTCACTCTACAGGCCTGTTCTACCACGGAACCGTCACTCTACAGGCCTGTTCTACCACGGAACCGTCAATCTTTAGGGGCGCCGAGACACAGCCCTGGGGGACTCTGCCTTCAGCACTGCTAATAAGGAGGATAATTGTTTTAGCTATACAGAGGATTGCTACGGCCTGGTCTGCTGAGACGAGCACcatcccaaaacacacagcatggTCAGTCCAGACACCACAGAGACGAGGCCTCCTAAATGGAACACTATCCTTatacagggcccatagggctctagtcagaGGTAATGCAACTCTATACGAAATAGGGACTCAGCCATGGCCTGATCTATAGTCATTGATGTTGGTTGTAGTGGTTTGAGAGTTGTTTGTTAGCTGTGACAAGACTGTAAAGTCTGTACAAATATATGTCCTGTGTAGTTAGCTGCTACATTCTGTTCTCTATGTCCTGTGTAGTTAGCTGCTACATTCTGTTCTCTATGTCCTGTGTAGTTAGCTGctacattctgttctctctctgacaagTTGGCTTGTGAAGATCACTCTGTCAATGCATGATGTTTTTGTAGTTGTTGTTTTCTCGACAAATCCTGTATTTTGGAGAGCACCATCTTATTCTGTATGCTGATTATTATATTACCATTGTaatatgtaccccccccccccccccaatatgtaccccccccccccttatattTCCATGTGTTGAATTGCGACAACGGTTTCTTAACCAGCATTCACTAAAATGTGTCTTTACGATTTTCTCTATTGAAGAAATAAACATTCACTTCAATGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1515464 lncRNA downstream 19184 75517337 ~ 75517880 (-) True G1326859
TU1515449 lncRNA downstream 37197 75499599 ~ 75499867 (-) True G1326851
TU1515425 lncRNA downstream 38835 75458007 ~ 75498229 (-) True G1326843
TU1514869 lncRNA downstream 128535 75408159 ~ 75408529 (-) True G1326432
TU1514838 lncRNA downstream 145969 75390359 ~ 75391095 (-) True G1326411
TU1515477 lncRNA upstream 11806 75558845 ~ 75559238 (-) True G1326872
TU1515462 lncRNA upstream 13625 75560664 ~ 75562238 (-) True G1326857
TU1515479 lncRNA upstream 22525 75569564 ~ 75571217 (-) False G1326874
TU1515480 lncRNA upstream 22525 75569564 ~ 75569842 (-) True G1326874
TU1515481 lncRNA upstream 33901 75580940 ~ 75581379 (-) True G1326875
XR_005036325.1 mRNA downstream 345130 75190621 ~ 75191934 (-) True LOC118938932
XM_036945389.1 mRNA downstream 548733 74883029 ~ 74988331 (-) True LOC110490689
XM_036945390.1 mRNA downstream 621779 74883029 ~ 74915285 (-) False LOC110490689
XM_036945387.1 mRNA downstream 660745 74806009 ~ 74876319 (-) True LOC110514333
XM_036945386.1 mRNA downstream 661048 74806009 ~ 74876016 (-) False LOC110514333
XM_036945406.1 mRNA upstream 17569 75564608 ~ 75648161 (-) False LOC110490682
XM_036945407.1 mRNA upstream 17569 75564608 ~ 75648161 (-) False LOC110490682
XM_036945408.1 mRNA upstream 17569 75564608 ~ 75648161 (-) False LOC110490682
XM_036945422.1 mRNA upstream 930510 76477549 ~ 76499885 (-) False LOC110513781
XM_036945421.1 mRNA upstream 930510 76477549 ~ 76499886 (-) True LOC110513781
TU1514494 other downstream 483707 75052749 ~ 75053357 (-) True G1326164
TU1514413 other downstream 763111 74772299 ~ 74773953 (-) True G1326095
TU1514360 other downstream 813664 74722589 ~ 74723400 (-) True G1326070
TU1514307 other downstream 929748 74605371 ~ 74607316 (-) True LOC118938855
TU1514158 other downstream 1141496 74375301 ~ 74395568 (-) True G1325915
TU1515635 other upstream 451467 75998506 ~ 75999000 (-) True G1326996
TU1516813 other upstream 1871282 77418321 ~ 77429149 (-) False LOC110515635
TU1516806 other upstream 1901229 77448268 ~ 77499704 (-) False LOC110515635
TU1516814 other upstream 1954981 77502020 ~ 77506774 (-) True LOC110515635
TU1517067 other upstream 2324240 77871279 ~ 77874604 (-) True G1328123

Expression Profile