RNA id: XM_036945422.1


Basic Information

Item Value
RNA id XM_036945422.1
length 4761
RNA type mRNA
GC content 0.52
exon number 14
gene id LOC110513781
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 76477549 ~ 76499886 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCACTTCCTTGTTTTTATGTCAGCTGTCAAATTCAATTGACGCGCGAAATAagcaaaacaaaacagaaatgtCACAGTCGGGGTGTCCTCTTGGTGACAGAATCCTAGTAGGTTACATTTTACCCGAAAAGAAGGTTAAAAACCCCGAAAATGACGACTCTGATTGGGAAGATGATGAGGAGGAAGAAGATGCACAGCCGGATTTTCTGGATATGAAAGAGATGGACAGCGTTAGTTCAGGAGGACATGTGTTTAATTCCTCCGTACCGGGCCGAAACGAAGTTGATTTCCTGGACAGCGTGTCTGGTAAGAGATGCAGAGTAATGGGCCGGTTCAGTCTGAAGGACCCGTGGTGGGAGGCTACCTGCACGACCCGCGCTGCCAAGGGCAAGCTGGTGCTACGGGGCTACCCTGCCTACCGCCTTCGCTCAGACCTCCAGGGAGACCCGGAccactctgtcctgtctctgttcctcACCGCCTGCGGCGTGGACGCACAGTTTGTCGTCCCCTTCTTTGCTTGGCTGCCGATGGGAAGGAAGGTGGAGTTTGCTAACTTGCAGGAAGTTCTGGCTGAGTTTGAGGAAGGAGAGCAGCACAGGGCTTTGGCACAGCAGATTAAAGCCTTGGTCTCTGTTTCAGTTGCAGGGATGCGCGTGACTGCTGCCTCTCTGTACCCCCATGTGATGAGATACCTGCCTACCCTACTGCCAGGGCGCTTCACAGAGCTCCTGAGTCGGGGAAAGAAAAGCCAAAAACATCCTGCGGCACAGGGTGCTACacagatagaggaggaggaggaagaggaggatctcaGCTTGCTGGCCAAAATAGAGGAGATGATCAAGACGGACGTCTGGAAGCTGGGCTTTAACTATgttatGTACAAGGAGTTGAAGGTGGTCCATTGCGAGGCTCAGCTGAGATCCTTCCATGAGTGTAAACTCTTCCAAGAGATCCCTCTGAAGCAGCGTAACGCCCTGCAAGTCTACGACTCTCTGAAGAACCACTGCTGCAGGACGGGCAGTACCTACACGGAGCTCCCCACCCTGTGTGACGAGGTCAGGAGAGGGTGTAGCTCCGTGATGGAGGTGGAGGTGTGGGACGCAGTCCACTTCCTCAAAGAGCTGGGCGTCGTGGTACGGGATCGCCAGAAGGTGGCGCTGCAGAACCTGCATTCTTATGAGACTGGGATAGCTGAGTGCCTACGCTGTCTGGTGCAGGAAGAGCCCTGGGTTATACCTCTGGATGTCATAGAGGTGCTGACTGCTTCAGCTCTGGAGAGGCTGAGGAAGacgggaggggatggagggagtagggaggatcaAGGTGAAGTGGACTCCGACGCAGAGCGGAAGGCTGATGAGCTGAATGAAAGGTGTGATATGGATGGCAGCGCTGCAGAGACAGACCGTACTAGTGCTGCTGTTAGAACAGCCAGCGGATACTCTGTCCCAGACCACATCAAACCTGAACCAGCCCCTACAGACCAGGGCCCTCCAGTAGATTTAGACCCAGCCCAGGGCCCTCCTCCAGTAGATTTAGACCCAGACCAGGTACGTGCAGCAGAGATGATCTGCTTCAATCCAGTGACGGTGATCAGCGGTAAGGGGGGCTGTGGTAAGACAACGGTGGTGAGTCTGGTGTTCAAGGCCGCCTTGCAGCAGAGCCCAGAGAAGGAGGTCAGGAAGGCATGCTGGGACTTTGAAAATGACTCCTTGGGGTCTGAGGCGTGGGAGGAAGCCGATGCGTGGGAGGAAGAAGCCCTGTCGAAGAGTCTCCTCTCTCAGTTAGAGGGGGAGGTAAAGGACGAGAAGAAGAAGTCGTCGTTGTGGGTTTTACAGGGAGAGGACGAGGTGTTACTAACAGCACCGACAGGGAGAGCTGCGTCTCTGCTCACCAAGAGGACCTGCTTCAAGGCCTACACCCTGCACCAGGTAGTGTGGAGTTTCATGCAGGCCAAGAAAGACCCCAACGGGGCTCCTGAGGAGTGGAAGTTTGCGTCTGTGCGCGTGTTGGTGGTGGACGAGGGCAGTCTGGTGTGTGTTCAGCTCCTCCACTCCGTCCTCACTATGCTCACCAAACACGCACAGCTCAGGAAGTTCGTCATCTTGGGTGATGTGCGTCAGCTGCCCAGTATCCAGCCAGGAAACACCTTGTATGACCTGTTCCACAGTCTGGGCCGAGCCCATTGGGCCATCGAGATGAGGACCAATCACAGAGCTGAGTCTCAACTCATCGTCAACAACGCCGGACAaattgcAGAGATGGGGATGAATCGTAGTTTCAGACCGCTCCACTACGACGCCATCTTGGATCTGAATGGAAGTTACACCATGCCCTCTGAAGACAAGAGGTTCATCCTCATCCTGCTGCCCAACACCGACTCTGACTCTGACTATGACCTTCAGGTGGCTATCGAACTACTATTGAAAGCTGCTCCAGGACTGAGGAATGACGCCACGTCACAGTTCATTGCCTTCAGACGGAAGGAGTGTGTCTTGATCAATGAGCTTTGCTGCAAACATTACTGCGACCACCGCACCAAAAACAACAAGAACCGACTAGATTTCCAGCCGAGAGATAAAGTCTGCTGTACAAAGAACGGCTACGTCACAGACAGGAACAAGGAAGTGTCTCCCGAAGAAGAGGACTTGGAGAACAGCTACGTATCTGACACGGACAGGACCAAGCGGAGACTTCCTGGTCTGGacggaggggagagacggagagggaacgGGGCCACACAGAGAGACGGAAGTGGTGACAAAATGAAAACTAAAGAGAAGAATAAAGAGCGTCTGTGTAACGGAGAGATATTCTTCATTAAACATGACGTGACAGAGGAGGAGGCGGGCTCACAGCGGAGCAGGAAGCAGAGGTACTTGACTCTGGATGATGGTGACGGACGGGAGCTGTGTGTTTCCTTCAGGGAGCTGCAGAGAGAATGTAAACTGCAACACGCCTGGGCTAGGACCATACACAccttccagGGGTCGGAGACCGAGACGATTGTGTACGTGCTGGGTAACGGTAGCGTCCAGACGTGGAAGCACGTGTACACGGCTGTGACACGGGGACAGAAGCGTGTATATGTCATAGCCAAGCGGGAGGGCATGGCCTCGGCCATCAAGAGACGCATCATCCCACGTAACACCCGGCTGGGAACCCTGGTCAAAGAGCTGTTGGTCCAGCCTGGGGCTGAGGGGCAGgaccaaccagaccagaaccaacCACAGCCGGGCACACCTCGCAGGGCAGCCCCAAGCTTCGGACCTACACAGACCACTCCTCTGGCCTCACAGACACCTAGCGGGTCTCTAAGGACCCCCTACAAAACCCCTATAGCAGCACCCAGACTCATTTCTACGCCCAGCCTAGCAGTCCCACTTCACGCCAATCGTGTCCAGTCCCACTCTACGTCGGTCCTACCCAGGAAGCTGTGGAGAAATGAGCCTCCAACAGCTCCTCAGGCAGATGCCTCAGACACCTCTCTAATGGACGACATCACTTTCAGTCAGGCATATACCTGGTCGCCTATGAACAGCAGCTCTGAGGACCCCTCTCAGGAGCAGCCTGGGtcgtgtgaggaggaggaggaagggatcgAGATGGAGGCTAgcagcagcgctgtagaggatGGACACATGGGGAAGGGTTCACATTTAGCTGCTCGGTCTGGGGTTGAGAGCACCCCTTCCAAGAGGACGCTCAGTCCTGACAGTGAGAAACAGAATGTAACTCATAAACAGATCAAGGTGGAGCCATTCGAATCACCGCTGGGCTGTTCCAGACTGCAGCAGCTCGCCCTCTGCACGCCCACCTCCCACGGCAAACGGCTTTTCCAAGGTCCACCCTCCGATCAGGACTGAACGTCTTCTCTCCCTGACCCATTGAAACCAGGATATCTTATGATTGATGGCCACTACTGCATTGATACCAGGATATCTTATGATTGATGGCCACTACTGCATTGATACCAGGATATCTTATGATTGATGGCCACTACTGCATTGATACCAGGATATCTTATGATTGATGGCCACTACTGCATTGATACCAGGATATCTTATGATTGATGGCCACTACTGCATTGATACCAGGATATCTTATGATTGATGGCCACTACTGCATTGATACCAGGACATCTTATGATTGATGGCCACTACTGCATTGATACCAGGACATCTTATGATTGATGGCCACTACTGCATTGATACCAGGATATCTTATGATTGATGGCCACTACTGCATTGATACCAGGATATCTTATGATTGATGGCAACTACTGCATTGATACCAGGATATCTTATGATTGATGGCCACTACTGCATTGATACCAGGATATCTTATGATTGATGGCCACTACTGCATTGATACCAGGATATCTTATGATTGATGGCCACTACTGCATTGATACCAGGATATCTTATGATTGATGGCCACTACTGCATTGATACCAGGATATCTTATGATTGATGGCCACTACTGCATGCAcggaatacaagtgtagaccttaccatgaaatgcttacttacaagcccataaccaatAATGCAATTTTAATTAAAAATAAGAGTTAAAAAtgatatttactaaataaactcgTTTTTTAAAAAGTAacgcaataaaataaaaattgtgaggttatatacagggggtaccggtaccgagacaATGTGTAGGGGGGTAGAGGTTAGTCGAGGTGATTGAGGTAGGTAGGGGtaacgtgactatgcatagatcatAGAGAGGAGca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1515845 lncRNA downstream 2998 76474222 ~ 76474551 (-) True G1327165
TU1515850 lncRNA downstream 5424 76469915 ~ 76472125 (-) False G1327167
TU1515851 lncRNA downstream 5424 76469915 ~ 76472125 (-) True G1327167
TU1515778 lncRNA downstream 182784 76294202 ~ 76294765 (-) True G1327107
TU1515760 lncRNA downstream 221521 76255623 ~ 76256028 (-) True G1327091
TU1515868 lncRNA upstream 238 76500123 ~ 76501233 (-) True LOC118936278
TU1515888 lncRNA upstream 53912 76553797 ~ 76554211 (-) True G1327196
TU1515901 lncRNA upstream 63607 76563492 ~ 76563843 (-) True G1327209
TU1515905 lncRNA upstream 68612 76568497 ~ 76568725 (-) True G1327213
TU1515992 lncRNA upstream 134714 76634599 ~ 76635961 (-) False G1327292
XM_036945406.1 mRNA downstream 829388 75564608 ~ 75648161 (-) False LOC110490682
XM_036945407.1 mRNA downstream 829388 75564608 ~ 75648161 (-) False LOC110490682
XM_036945408.1 mRNA downstream 829388 75564608 ~ 75648161 (-) False LOC110490682
XM_036945400.1 mRNA downstream 930510 75537064 ~ 75547039 (-) False LOC110518764
XM_036945401.1 mRNA downstream 930510 75537064 ~ 75547039 (-) False LOC110518764
XM_036945425.1 mRNA upstream 234 76500119 ~ 76514649 (-) False LOC118936278
XM_036945423.1 mRNA upstream 234 76500119 ~ 76525321 (-) False LOC118936278
XR_005036242.1 mRNA upstream 234 76500119 ~ 76525322 (-) False LOC118936278
LOC110514961 mRNA upstream 175236 76675121 ~ 76681446 (-) True LOC110514961
XM_036945426.1 mRNA upstream 371582 76871467 ~ 77277803 (-) False LOC110512778
TU1515635 other downstream 478549 75998506 ~ 75999000 (-) True G1326996
TU1514494 other downstream 1424192 75052749 ~ 75053357 (-) True G1326164
TU1514413 other downstream 1703596 74772299 ~ 74773953 (-) True G1326095
TU1514360 other downstream 1754149 74722589 ~ 74723400 (-) True G1326070
TU1514307 other downstream 1870233 74605371 ~ 74607316 (-) True LOC118938855
TU1516813 other upstream 918436 77418321 ~ 77429149 (-) False LOC110515635
TU1516806 other upstream 948383 77448268 ~ 77499704 (-) False LOC110515635
TU1516814 other upstream 1002135 77502020 ~ 77506774 (-) True LOC110515635
TU1517067 other upstream 1371394 77871279 ~ 77874604 (-) True G1328123
TU1517575 other upstream 1798691 78298576 ~ 78300855 (-) False LOC118938867

Expression Profile