RNA id: TU1516815


Basic Information

Item Value
RNA id TU1516815
length 626
lncRNA type read_through
GC content 0.50
exon number 3
gene id rab21
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 77533131 ~ 77536232 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCTCACCAAGAAGCTCAACATCACAGGGAAGAGGGTGAACCTGGCCATATGGgaTACAGCAGGTCAGGAGCGGTTCCACGCGTTAGGTCCCATCTACTACAGAGACTCCAACGGAGCCATATTGGTCTATGACATCACAGATGAGGACTCATTCCAGAAGgTGAAAAACTGGGTGAAAGAATTGAGGAAAATGTTGGGGAACGAGATTTGTTTATGTATAGTAGGTAAGTCATTGCAGACCACAGCTAACTTTTCACTTTTCAACACTTCTTTTATTGTTTGTCTCATTTCACCCTGTAAATGGATCCAtcttgggcaggtagcctagtggttagaggtaggggtagcctagtggttagaggcagggtagcctagtggttagaggtagggtggcctagtggttagaggcagggtagcctagtggttagaggtaggggtagcctagtggttagaggcagggtagcctagtggttagaggcagggtagcctagtggttagaggtaggggtagcctagtggttagaggcaggggtagcctagtggttagaggcagggtagcctagtggttagaggtaggggtagcctagtggttagaggcagggtagcctagtggttagaggtaggg

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1516811 lncRNA downstream 14738 77517464 ~ 77518393 (-) True G1327903
TU1516841 lncRNA downstream 51850 77480922 ~ 77481281 (-) True G1327927
TU1516832 lncRNA downstream 77432 77455388 ~ 77455699 (-) True G1327922
TU1516808 lncRNA downstream 118489 77413080 ~ 77414642 (-) True G1327900
TU1516810 lncRNA downstream 120267 77412055 ~ 77412864 (-) True G1327902
TU1516863 lncRNA upstream 6200 77542432 ~ 77544588 (-) True G1327945
TU1516864 lncRNA upstream 26526 77562758 ~ 77563237 (-) True G1327946
TU1516809 lncRNA upstream 39371 77575603 ~ 77581107 (-) True LOC110516314
TU1516876 lncRNA upstream 51145 77587377 ~ 77597428 (-) False trnak-cuu-19
TU1516875 lncRNA upstream 54046 77590278 ~ 77598491 (-) True trnak-cuu-19
XM_036945428.1 mRNA downstream 17919 77514286 ~ 77515212 (-) True LOC118936539
XM_036945427.1 mRNA downstream 26329 77418263 ~ 77506802 (-) False LOC110515635
XM_036945562.1 mRNA downstream 180681 77351278 ~ 77352450 (-) True LOC118938902
XM_036945426.1 mRNA downstream 255328 76871467 ~ 77277803 (-) False LOC110512778
XR_005036246.1 mRNA upstream 38965 77575197 ~ 77581151 (-) False LOC110516314
trnak-cuu-8 mRNA upstream 45317 77581549 ~ 77581621 (-) True trnak-cuu-8
XM_036945430.1 mRNA upstream 47634 77583866 ~ 77609486 (-) True LOC110511982
trnak-cuu-9 mRNA upstream 49858 77586090 ~ 77586162 (-) True trnak-cuu-9
trnak-cuu-10 mRNA upstream 50487 77586719 ~ 77586791 (-) True trnak-cuu-10
TU1516814 other downstream 26357 77502020 ~ 77506774 (-) True LOC110515635
TU1516806 other downstream 33427 77448268 ~ 77499704 (-) False LOC110515635
TU1516813 other downstream 103982 77418321 ~ 77429149 (-) False LOC110515635
TU1515635 other downstream 1534131 75998506 ~ 75999000 (-) True G1326996
TU1514494 other downstream 2479774 75052749 ~ 75053357 (-) True G1326164
TU1517067 other upstream 335047 77871279 ~ 77874604 (-) True G1328123
TU1517575 other upstream 762344 78298576 ~ 78300855 (-) False LOC118938867
TU1517636 other upstream 765436 78301668 ~ 78302580 (-) False LOC118938867
TU1518138 other upstream 1226867 78763099 ~ 78766048 (-) False G1328815
TU1518205 other upstream 1334093 78870325 ~ 78871031 (-) True G1328861

Expression Profile